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-rw-r--r--log/test.log20
-rw-r--r--tests/testthat/test_mixed.R11
2 files changed, 18 insertions, 13 deletions
diff --git a/log/test.log b/log/test.log
index cec5e7ed..8166668a 100644
--- a/log/test.log
+++ b/log/test.log
@@ -4,7 +4,7 @@
✔ | 5 | Analytical solutions for coupled models [1.5s]
✔ | 5 | Calculation of Akaike weights
✔ | 3 | Export dataset for reading into CAKE
-✔ | 6 | Use of precompiled symbols in mkinpredict [3.2s]
+✔ | 6 | Use of precompiled symbols in mkinpredict [3.1s]
✔ | 12 | Confidence intervals and p-values [0.4s]
✔ | 1 12 | Dimethenamid data from 2018 [12.5s]
────────────────────────────────────────────────────────────────────────────────
@@ -18,22 +18,25 @@ Reason: Fitting this ODE model with saemix takes about 15 minutes on my system
✔ | 4 | Test fitting the decline of metabolites from their maximum [0.2s]
✔ | 1 | Fitting the logistic model [0.1s]
✔ | 10 | Batch fitting and diagnosing hierarchical kinetic models [19.1s]
-✔ | 1 17 | Nonlinear mixed-effects models [294.0s]
+✔ | 2 16 | Nonlinear mixed-effects models [148.6s]
────────────────────────────────────────────────────────────────────────────────
Skip ('test_mixed.R:78'): saemix results are reproducible for biphasic fits
Reason: Fitting with saemix takes around 10 minutes when using deSolve
+
+Skip ('test_mixed.R:131'): SFO-SFO saemix specific analytical solution work
+Reason: This is seldom used, so save some time
────────────────────────────────────────────────────────────────────────────────
✔ | 3 | Test dataset classes mkinds and mkindsg
✔ | 10 | Special cases of mkinfit calls [0.3s]
✔ | 3 | mkinfit features [0.5s]
✔ | 8 | mkinmod model generation and printing
✔ | 3 | Model predictions with mkinpredict [0.1s]
-✔ | 12 | Multistart method for saem.mmkin models [23.2s]
+✔ | 12 | Multistart method for saem.mmkin models [23.1s]
✔ | 16 | Evaluations according to 2015 NAFTA guidance [1.5s]
-✔ | 9 | Nonlinear mixed-effects models with nlme [3.8s]
-✔ | 15 | Plotting [4.8s]
+✔ | 9 | Nonlinear mixed-effects models with nlme [3.9s]
+✔ | 15 | Plotting [4.4s]
✔ | 4 | Residuals extracted from mkinfit models
-✔ | 1 36 | saemix parent models [30.7s]
+✔ | 1 36 | saemix parent models [31.1s]
────────────────────────────────────────────────────────────────────────────────
Skip ('test_saemix_parent.R:143'): We can also use mkin solution methods for saem
Reason: This still takes almost 2.5 minutes although we do not solve ODEs
@@ -48,11 +51,12 @@ Reason: This still takes almost 2.5 minutes although we do not solve ODEs
✔ | 4 | Calculation of maximum time weighted average concentrations (TWAs) [0.7s]
══ Results ═════════════════════════════════════════════════════════════════════
-Duration: 406.1 s
+Duration: 260.5 s
── Skipped tests ──────────────────────────────────────────────────────────────
• Fitting this ODE model with saemix takes about 15 minutes on my system (1)
• Fitting with saemix takes around 10 minutes when using deSolve (1)
+• This is seldom used, so save some time (1)
• This still takes almost 2.5 minutes although we do not solve ODEs (1)
-[ FAIL 0 | WARN 0 | SKIP 3 | PASS 282 ]
+[ FAIL 0 | WARN 0 | SKIP 4 | PASS 281 ]
diff --git a/tests/testthat/test_mixed.R b/tests/testthat/test_mixed.R
index c60d1421..8eb8e60c 100644
--- a/tests/testthat/test_mixed.R
+++ b/tests/testthat/test_mixed.R
@@ -123,14 +123,15 @@ test_that("SFO-SFO saemix specific analytical solution work", {
expect_error(saem(mmkin_sfo_sfo, solution_type = "analytical"), "not supported")
- saem_sfo_sfo_mkin_eigen<- saem(mmkin_sfo_sfo, solution_type = "eigen")
- expect_equal(
- endpoints(saem_sfo_sfo_saemix_analytical),
- endpoints(saem_sfo_sfo_mkin_eigen))
-
saem_sfo_sfo_mkin_desolve <- saem(mmkin_sfo_sfo, solution_type = "deSolve")
expect_equal(
endpoints(saem_sfo_sfo_saemix_analytical),
endpoints(saem_sfo_sfo_mkin_desolve))
+ skip("This is seldom used, so save some time")
+
+ saem_sfo_sfo_mkin_eigen<- saem(mmkin_sfo_sfo, solution_type = "eigen")
+ expect_equal(
+ endpoints(saem_sfo_sfo_saemix_analytical),
+ endpoints(saem_sfo_sfo_mkin_eigen))
})

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