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+ <ul class="nav navbar-nav"><li>
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@@ -99,6 +42,9 @@ a decreasing rate constant." />
<a href="../articles/FOCUS_L.html">Example evaluation of FOCUS Laboratory Data L1 to L3</a>
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+ <a href="../articles/web_only/dimethenamid_2018.html">Example evaluations of dimethenamid data from 2018 with nonlinear mixed-effects models</a>
+ </li>
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@@ -113,34 +59,27 @@ a decreasing rate constant." />
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<div class="page-header">
<h1>First-Order Multi-Compartment kinetics</h1>
- <small class="dont-index">Source: <a href='https://github.com/jranke/mkin/blob/master/R/parent_solutions.R'><code>R/parent_solutions.R</code></a></small>
+ <small class="dont-index">Source: <a href="https://github.com/jranke/mkin/blob/HEAD/R/parent_solutions.R" class="external-link"><code>R/parent_solutions.R</code></a></small>
<div class="hidden name"><code>FOMC.solution.Rd</code></div>
</div>
@@ -149,98 +88,94 @@ a decreasing rate constant." />
a decreasing rate constant.</p>
</div>
- <pre class="usage"><span class='fu'>FOMC.solution</span><span class='op'>(</span><span class='va'>t</span>, <span class='va'>parent_0</span>, <span class='va'>alpha</span>, <span class='va'>beta</span><span class='op'>)</span></pre>
-
- <h2 class="hasAnchor" id="arguments"><a class="anchor" href="#arguments"></a>Arguments</h2>
- <table class="ref-arguments">
- <colgroup><col class="name" /><col class="desc" /></colgroup>
- <tr>
- <th>t</th>
- <td><p>Time.</p></td>
- </tr>
- <tr>
- <th>parent_0</th>
- <td><p>Starting value for the response variable at time zero.</p></td>
- </tr>
- <tr>
- <th>alpha</th>
- <td><p>Shape parameter determined by coefficient of variation of rate
-constant values.</p></td>
- </tr>
- <tr>
- <th>beta</th>
- <td><p>Location parameter.</p></td>
- </tr>
- </table>
-
- <h2 class="hasAnchor" id="value"><a class="anchor" href="#value"></a>Value</h2>
+ <div id="ref-usage">
+ <div class="sourceCode"><pre class="sourceCode r"><code><span class="fu">FOMC.solution</span><span class="op">(</span><span class="va">t</span>, <span class="va">parent_0</span>, <span class="va">alpha</span>, <span class="va">beta</span><span class="op">)</span></code></pre></div>
+ </div>
+ <div id="arguments">
+ <h2>Arguments</h2>
+ <dl><dt>t</dt>
+<dd><p>Time.</p></dd>
+<dt>parent_0</dt>
+<dd><p>Starting value for the response variable at time zero.</p></dd>
+<dt>alpha</dt>
+<dd><p>Shape parameter determined by coefficient of variation of rate
+constant values.</p></dd>
+<dt>beta</dt>
+<dd><p>Location parameter.</p></dd>
+</dl></div>
+ <div id="value">
+ <h2>Value</h2>
<p>The value of the response variable at time <code>t</code>.</p>
- <h2 class="hasAnchor" id="details"><a class="anchor" href="#details"></a>Details</h2>
-
+ </div>
+ <div id="details">
+ <h2>Details</h2>
<p>The form given here differs slightly from the original reference by
Gustafson and Holden (1990). The parameter <code>beta</code> corresponds to 1/beta
in the original equation.</p>
- <h2 class="hasAnchor" id="note"><a class="anchor" href="#note"></a>Note</h2>
-
+ </div>
+ <div id="note">
+ <h2>Note</h2>
<p>The solution of the FOMC kinetic model reduces to the
-<code><a href='SFO.solution.html'>SFO.solution</a></code> for large values of <code>alpha</code> and
+<code><a href="SFO.solution.html">SFO.solution</a></code> for large values of <code>alpha</code> and
<code>beta</code> with \(k = \frac{\beta}{\alpha}\).</p>
- <h2 class="hasAnchor" id="references"><a class="anchor" href="#references"></a>References</h2>
-
- <p>FOCUS (2006) &#8220;Guidance Document on Estimating Persistence
+ </div>
+ <div id="references">
+ <h2>References</h2>
+ <p>FOCUS (2006) “Guidance Document on Estimating Persistence
and Degradation Kinetics from Environmental Fate Studies on Pesticides in
-EU Registration&#8221; Report of the FOCUS Work Group on Degradation Kinetics,
+EU Registration” Report of the FOCUS Work Group on Degradation Kinetics,
EC Document Reference Sanco/10058/2005 version 2.0, 434 pp,
-<a href='http://esdac.jrc.ec.europa.eu/projects/degradation-kinetics'>http://esdac.jrc.ec.europa.eu/projects/degradation-kinetics</a></p>
-<p>FOCUS (2014) &#8220;Generic guidance for Estimating Persistence
+<a href="http://esdac.jrc.ec.europa.eu/projects/degradation-kinetics" class="external-link">http://esdac.jrc.ec.europa.eu/projects/degradation-kinetics</a></p>
+<p>FOCUS (2014) “Generic guidance for Estimating Persistence
and Degradation Kinetics from Environmental Fate Studies on Pesticides in
-EU Registration&#8221; Report of the FOCUS Work Group on Degradation Kinetics,
+EU Registration” Report of the FOCUS Work Group on Degradation Kinetics,
Version 1.1, 18 December 2014
-<a href='http://esdac.jrc.ec.europa.eu/projects/degradation-kinetics'>http://esdac.jrc.ec.europa.eu/projects/degradation-kinetics</a></p>
+<a href="http://esdac.jrc.ec.europa.eu/projects/degradation-kinetics" class="external-link">http://esdac.jrc.ec.europa.eu/projects/degradation-kinetics</a></p>
<p>Gustafson DI and Holden LR (1990) Nonlinear pesticide dissipation in soil:
A new model based on spatial variability. <em>Environmental Science and
Technology</em> <b>24</b>, 1032-1038</p>
- <h2 class="hasAnchor" id="see-also"><a class="anchor" href="#see-also"></a>See also</h2>
-
- <div class='dont-index'><p>Other parent solutions:
-<code><a href='DFOP.solution.html'>DFOP.solution</a>()</code>,
-<code><a href='HS.solution.html'>HS.solution</a>()</code>,
-<code><a href='IORE.solution.html'>IORE.solution</a>()</code>,
-<code><a href='SFO.solution.html'>SFO.solution</a>()</code>,
-<code><a href='SFORB.solution.html'>SFORB.solution</a>()</code>,
-<code><a href='logistic.solution.html'>logistic.solution</a>()</code></p></div>
-
- <h2 class="hasAnchor" id="examples"><a class="anchor" href="#examples"></a>Examples</h2>
- <pre class="examples"><div class='input'>
- <span class='fu'><a href='https://rdrr.io/r/graphics/plot.default.html'>plot</a></span><span class='op'>(</span><span class='kw'>function</span><span class='op'>(</span><span class='va'>x</span><span class='op'>)</span> <span class='fu'>FOMC.solution</span><span class='op'>(</span><span class='va'>x</span>, <span class='fl'>100</span>, <span class='fl'>10</span>, <span class='fl'>2</span><span class='op'>)</span>, <span class='fl'>0</span>, <span class='fl'>2</span>, ylim <span class='op'>=</span> <span class='fu'><a href='https://rdrr.io/r/base/c.html'>c</a></span><span class='op'>(</span><span class='fl'>0</span>, <span class='fl'>100</span><span class='op'>)</span><span class='op'>)</span>
-</div><div class='img'><img src='FOMC.solution-1.png' alt='' width='700' height='433' /></div><div class='input'>
-</div></pre>
+ </div>
+ <div id="see-also">
+ <h2>See also</h2>
+ <div class="dont-index"><p>Other parent solutions:
+<code><a href="DFOP.solution.html">DFOP.solution</a>()</code>,
+<code><a href="HS.solution.html">HS.solution</a>()</code>,
+<code><a href="IORE.solution.html">IORE.solution</a>()</code>,
+<code><a href="SFO.solution.html">SFO.solution</a>()</code>,
+<code><a href="SFORB.solution.html">SFORB.solution</a>()</code>,
+<code><a href="logistic.solution.html">logistic.solution</a>()</code></p></div>
+ </div>
+
+ <div id="ref-examples">
+ <h2>Examples</h2>
+ <div class="sourceCode"><pre class="sourceCode r"><code><span class="r-in"></span>
+<span class="r-in"> <span class="fu"><a href="https://rdrr.io/r/graphics/plot.default.html" class="external-link">plot</a></span><span class="op">(</span><span class="kw">function</span><span class="op">(</span><span class="va">x</span><span class="op">)</span> <span class="fu">FOMC.solution</span><span class="op">(</span><span class="va">x</span>, <span class="fl">100</span>, <span class="fl">10</span>, <span class="fl">2</span><span class="op">)</span>, <span class="fl">0</span>, <span class="fl">2</span>, ylim <span class="op">=</span> <span class="fu"><a href="https://rdrr.io/r/base/c.html" class="external-link">c</a></span><span class="op">(</span><span class="fl">0</span>, <span class="fl">100</span><span class="op">)</span><span class="op">)</span></span>
+<span class="r-plt img"><img src="FOMC.solution-1.png" alt="" width="700" height="433"></span>
+<span class="r-in"></span>
+</code></pre></div>
+ </div>
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