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index f1a40d44..bfb69a40 100644
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+a concentration dependent rate constant."><!-- mathjax --><script src="https://cdnjs.cloudflare.com/ajax/libs/mathjax/2.7.5/MathJax.js" integrity="sha256-nvJJv9wWKEm88qvoQl9ekL2J+k/RWIsaSScxxlsrv8k=" crossorigin="anonymous"></script><script src="https://cdnjs.cloudflare.com/ajax/libs/mathjax/2.7.5/config/TeX-AMS-MML_HTMLorMML.js" integrity="sha256-84DKXVJXs0/F8OTMzX4UR909+jtl4G7SPypPavF+GfA=" crossorigin="anonymous"></script><!--[if lt IE 9]>
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- <span class="version label label-default" data-toggle="tooltip" data-placement="bottom" title="Released version">1.0.3</span>
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+ <ul class="nav navbar-nav"><li>
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@@ -99,6 +42,9 @@ a concentration dependent rate constant." />
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@@ -113,34 +59,27 @@ a concentration dependent rate constant." />
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<div class="page-header">
<h1>Indeterminate order rate equation kinetics</h1>
- <small class="dont-index">Source: <a href='https://github.com/jranke/mkin/blob/master/R/parent_solutions.R'><code>R/parent_solutions.R</code></a></small>
+ <small class="dont-index">Source: <a href="https://github.com/jranke/mkin/blob/HEAD/R/parent_solutions.R" class="external-link"><code>R/parent_solutions.R</code></a></small>
<div class="hidden name"><code>IORE.solution.Rd</code></div>
</div>
@@ -149,100 +88,97 @@ a concentration dependent rate constant." />
a concentration dependent rate constant.</p>
</div>
- <pre class="usage"><span class='fu'>IORE.solution</span><span class='op'>(</span><span class='va'>t</span>, <span class='va'>parent_0</span>, <span class='va'>k__iore</span>, <span class='va'>N</span><span class='op'>)</span></pre>
-
- <h2 class="hasAnchor" id="arguments"><a class="anchor" href="#arguments"></a>Arguments</h2>
- <table class="ref-arguments">
- <colgroup><col class="name" /><col class="desc" /></colgroup>
- <tr>
- <th>t</th>
- <td><p>Time.</p></td>
- </tr>
- <tr>
- <th>parent_0</th>
- <td><p>Starting value for the response variable at time zero.</p></td>
- </tr>
- <tr>
- <th>k__iore</th>
- <td><p>Rate constant. Note that this depends on the concentration
-units used.</p></td>
- </tr>
- <tr>
- <th>N</th>
- <td><p>Exponent describing the nonlinearity of the rate equation</p></td>
- </tr>
- </table>
-
- <h2 class="hasAnchor" id="value"><a class="anchor" href="#value"></a>Value</h2>
+ <div id="ref-usage">
+ <div class="sourceCode"><pre class="sourceCode r"><code><span class="fu">IORE.solution</span><span class="op">(</span><span class="va">t</span>, <span class="va">parent_0</span>, <span class="va">k__iore</span>, <span class="va">N</span><span class="op">)</span></code></pre></div>
+ </div>
+ <div id="arguments">
+ <h2>Arguments</h2>
+ <dl><dt>t</dt>
+<dd><p>Time.</p></dd>
+<dt>parent_0</dt>
+<dd><p>Starting value for the response variable at time zero.</p></dd>
+<dt>k__iore</dt>
+<dd><p>Rate constant. Note that this depends on the concentration
+units used.</p></dd>
+<dt>N</dt>
+<dd><p>Exponent describing the nonlinearity of the rate equation</p></dd>
+</dl></div>
+ <div id="value">
+ <h2>Value</h2>
<p>The value of the response variable at time <code>t</code>.</p>
- <h2 class="hasAnchor" id="note"><a class="anchor" href="#note"></a>Note</h2>
-
+ </div>
+ <div id="note">
+ <h2>Note</h2>
<p>The solution of the IORE kinetic model reduces to the
-<code><a href='SFO.solution.html'>SFO.solution</a></code> if N = 1. The parameters of the IORE model can
+<code><a href="SFO.solution.html">SFO.solution</a></code> if N = 1. The parameters of the IORE model can
be transformed to equivalent parameters of the FOMC mode - see the NAFTA
guidance for details.</p>
- <h2 class="hasAnchor" id="references"><a class="anchor" href="#references"></a>References</h2>
-
+ </div>
+ <div id="references">
+ <h2>References</h2>
<p>NAFTA Technical Working Group on Pesticides (not dated) Guidance
for Evaluating and Calculating Degradation Kinetics in Environmental Media</p>
- <h2 class="hasAnchor" id="see-also"><a class="anchor" href="#see-also"></a>See also</h2>
-
- <div class='dont-index'><p>Other parent solutions:
-<code><a href='DFOP.solution.html'>DFOP.solution</a>()</code>,
-<code><a href='FOMC.solution.html'>FOMC.solution</a>()</code>,
-<code><a href='HS.solution.html'>HS.solution</a>()</code>,
-<code><a href='SFO.solution.html'>SFO.solution</a>()</code>,
-<code><a href='SFORB.solution.html'>SFORB.solution</a>()</code>,
-<code><a href='logistic.solution.html'>logistic.solution</a>()</code></p></div>
-
- <h2 class="hasAnchor" id="examples"><a class="anchor" href="#examples"></a>Examples</h2>
- <pre class="examples"><div class='input'>
- <span class='fu'><a href='https://rdrr.io/r/graphics/plot.default.html'>plot</a></span><span class='op'>(</span><span class='kw'>function</span><span class='op'>(</span><span class='va'>x</span><span class='op'>)</span> <span class='fu'>IORE.solution</span><span class='op'>(</span><span class='va'>x</span>, <span class='fl'>100</span>, <span class='fl'>0.2</span>, <span class='fl'>1.3</span><span class='op'>)</span>, <span class='fl'>0</span>, <span class='fl'>2</span>, ylim <span class='op'>=</span> <span class='fu'><a href='https://rdrr.io/r/base/c.html'>c</a></span><span class='op'>(</span><span class='fl'>0</span>, <span class='fl'>100</span><span class='op'>)</span><span class='op'>)</span>
-</div><div class='img'><img src='IORE.solution-1.png' alt='' width='700' height='433' /></div><div class='input'> <span class='co'># \dontrun{</span>
- <span class='va'>fit.fomc</span> <span class='op'>&lt;-</span> <span class='fu'><a href='mkinfit.html'>mkinfit</a></span><span class='op'>(</span><span class='st'>"FOMC"</span>, <span class='va'>FOCUS_2006_C</span>, quiet <span class='op'>=</span> <span class='cn'>TRUE</span><span class='op'>)</span>
- <span class='va'>fit.iore</span> <span class='op'>&lt;-</span> <span class='fu'><a href='mkinfit.html'>mkinfit</a></span><span class='op'>(</span><span class='st'>"IORE"</span>, <span class='va'>FOCUS_2006_C</span>, quiet <span class='op'>=</span> <span class='cn'>TRUE</span><span class='op'>)</span>
- <span class='va'>fit.iore.deS</span> <span class='op'>&lt;-</span> <span class='fu'><a href='mkinfit.html'>mkinfit</a></span><span class='op'>(</span><span class='st'>"IORE"</span>, <span class='va'>FOCUS_2006_C</span>, solution_type <span class='op'>=</span> <span class='st'>"deSolve"</span>, quiet <span class='op'>=</span> <span class='cn'>TRUE</span><span class='op'>)</span>
-
- <span class='fu'><a href='https://rdrr.io/r/base/print.html'>print</a></span><span class='op'>(</span><span class='fu'><a href='https://rdrr.io/r/base/data.frame.html'>data.frame</a></span><span class='op'>(</span><span class='va'>fit.fomc</span><span class='op'>$</span><span class='va'>par</span>, <span class='va'>fit.iore</span><span class='op'>$</span><span class='va'>par</span>, <span class='va'>fit.iore.deS</span><span class='op'>$</span><span class='va'>par</span>,
- row.names <span class='op'>=</span> <span class='fu'><a href='https://rdrr.io/r/base/paste.html'>paste</a></span><span class='op'>(</span><span class='st'>"model par"</span>, <span class='fl'>1</span><span class='op'>:</span><span class='fl'>4</span><span class='op'>)</span><span class='op'>)</span><span class='op'>)</span>
-</div><div class='output co'>#&gt; fit.fomc.par fit.iore.par fit.iore.deS.par
-#&gt; model par 1 85.87489063 85.874890 85.874890
-#&gt; model par 2 0.05192238 -4.826631 -4.826631
-#&gt; model par 3 0.65096665 1.949403 1.949403
-#&gt; model par 4 1.85744396 1.857444 1.857444</div><div class='input'> <span class='fu'><a href='https://rdrr.io/r/base/print.html'>print</a></span><span class='op'>(</span><span class='fu'><a href='https://rdrr.io/r/base/cbind.html'>rbind</a></span><span class='op'>(</span>fomc <span class='op'>=</span> <span class='fu'><a href='endpoints.html'>endpoints</a></span><span class='op'>(</span><span class='va'>fit.fomc</span><span class='op'>)</span><span class='op'>$</span><span class='va'>distimes</span>, iore <span class='op'>=</span> <span class='fu'><a href='endpoints.html'>endpoints</a></span><span class='op'>(</span><span class='va'>fit.iore</span><span class='op'>)</span><span class='op'>$</span><span class='va'>distimes</span>,
- iore.deS <span class='op'>=</span> <span class='fu'><a href='endpoints.html'>endpoints</a></span><span class='op'>(</span><span class='va'>fit.iore</span><span class='op'>)</span><span class='op'>$</span><span class='va'>distimes</span><span class='op'>)</span><span class='op'>)</span>
-</div><div class='output co'>#&gt; DT50 DT90 DT50back
-#&gt; fomc 1.785233 15.1479 4.559973
-#&gt; iore 1.785233 15.1479 4.559973
-#&gt; iore.deS 1.785233 15.1479 4.559973</div><div class='input'> <span class='co'># }</span>
-
-</div></pre>
+ </div>
+ <div id="see-also">
+ <h2>See also</h2>
+ <div class="dont-index"><p>Other parent solutions:
+<code><a href="DFOP.solution.html">DFOP.solution</a>()</code>,
+<code><a href="FOMC.solution.html">FOMC.solution</a>()</code>,
+<code><a href="HS.solution.html">HS.solution</a>()</code>,
+<code><a href="SFO.solution.html">SFO.solution</a>()</code>,
+<code><a href="SFORB.solution.html">SFORB.solution</a>()</code>,
+<code><a href="logistic.solution.html">logistic.solution</a>()</code></p></div>
+ </div>
+
+ <div id="ref-examples">
+ <h2>Examples</h2>
+ <div class="sourceCode"><pre class="sourceCode r"><code><span class="r-in"></span>
+<span class="r-in"> <span class="fu"><a href="https://rdrr.io/r/graphics/plot.default.html" class="external-link">plot</a></span><span class="op">(</span><span class="kw">function</span><span class="op">(</span><span class="va">x</span><span class="op">)</span> <span class="fu">IORE.solution</span><span class="op">(</span><span class="va">x</span>, <span class="fl">100</span>, <span class="fl">0.2</span>, <span class="fl">1.3</span><span class="op">)</span>, <span class="fl">0</span>, <span class="fl">2</span>, ylim <span class="op">=</span> <span class="fu"><a href="https://rdrr.io/r/base/c.html" class="external-link">c</a></span><span class="op">(</span><span class="fl">0</span>, <span class="fl">100</span><span class="op">)</span><span class="op">)</span></span>
+<span class="r-plt img"><img src="IORE.solution-1.png" alt="" width="700" height="433"></span>
+<span class="r-in"> <span class="co"># \dontrun{</span></span>
+<span class="r-in"> <span class="va">fit.fomc</span> <span class="op">&lt;-</span> <span class="fu"><a href="mkinfit.html">mkinfit</a></span><span class="op">(</span><span class="st">"FOMC"</span>, <span class="va">FOCUS_2006_C</span>, quiet <span class="op">=</span> <span class="cn">TRUE</span><span class="op">)</span></span>
+<span class="r-in"> <span class="va">fit.iore</span> <span class="op">&lt;-</span> <span class="fu"><a href="mkinfit.html">mkinfit</a></span><span class="op">(</span><span class="st">"IORE"</span>, <span class="va">FOCUS_2006_C</span>, quiet <span class="op">=</span> <span class="cn">TRUE</span><span class="op">)</span></span>
+<span class="r-in"> <span class="va">fit.iore.deS</span> <span class="op">&lt;-</span> <span class="fu"><a href="mkinfit.html">mkinfit</a></span><span class="op">(</span><span class="st">"IORE"</span>, <span class="va">FOCUS_2006_C</span>, solution_type <span class="op">=</span> <span class="st">"deSolve"</span>, quiet <span class="op">=</span> <span class="cn">TRUE</span><span class="op">)</span></span>
+<span class="r-in"></span>
+<span class="r-in"> <span class="fu"><a href="https://rdrr.io/r/base/print.html" class="external-link">print</a></span><span class="op">(</span><span class="fu"><a href="https://rdrr.io/r/base/data.frame.html" class="external-link">data.frame</a></span><span class="op">(</span><span class="va">fit.fomc</span><span class="op">$</span><span class="va">par</span>, <span class="va">fit.iore</span><span class="op">$</span><span class="va">par</span>, <span class="va">fit.iore.deS</span><span class="op">$</span><span class="va">par</span>, </span>
+<span class="r-in"> row.names <span class="op">=</span> <span class="fu"><a href="https://rdrr.io/r/base/paste.html" class="external-link">paste</a></span><span class="op">(</span><span class="st">"model par"</span>, <span class="fl">1</span><span class="op">:</span><span class="fl">4</span><span class="op">)</span><span class="op">)</span><span class="op">)</span></span>
+<span class="r-out co"><span class="r-pr">#&gt;</span> fit.fomc.par fit.iore.par fit.iore.deS.par</span>
+<span class="r-out co"><span class="r-pr">#&gt;</span> model par 1 85.87489063 85.874890 85.874890</span>
+<span class="r-out co"><span class="r-pr">#&gt;</span> model par 2 0.05192238 -4.826631 -4.826631</span>
+<span class="r-out co"><span class="r-pr">#&gt;</span> model par 3 0.65096665 1.949403 1.949403</span>
+<span class="r-out co"><span class="r-pr">#&gt;</span> model par 4 1.85744396 1.857444 1.857444</span>
+<span class="r-in"> <span class="fu"><a href="https://rdrr.io/r/base/print.html" class="external-link">print</a></span><span class="op">(</span><span class="fu"><a href="https://rdrr.io/r/base/cbind.html" class="external-link">rbind</a></span><span class="op">(</span>fomc <span class="op">=</span> <span class="fu"><a href="endpoints.html">endpoints</a></span><span class="op">(</span><span class="va">fit.fomc</span><span class="op">)</span><span class="op">$</span><span class="va">distimes</span>, iore <span class="op">=</span> <span class="fu"><a href="endpoints.html">endpoints</a></span><span class="op">(</span><span class="va">fit.iore</span><span class="op">)</span><span class="op">$</span><span class="va">distimes</span>, </span>
+<span class="r-in"> iore.deS <span class="op">=</span> <span class="fu"><a href="endpoints.html">endpoints</a></span><span class="op">(</span><span class="va">fit.iore</span><span class="op">)</span><span class="op">$</span><span class="va">distimes</span><span class="op">)</span><span class="op">)</span></span>
+<span class="r-out co"><span class="r-pr">#&gt;</span> DT50 DT90 DT50back</span>
+<span class="r-out co"><span class="r-pr">#&gt;</span> fomc 1.785233 15.1479 4.559973</span>
+<span class="r-out co"><span class="r-pr">#&gt;</span> iore 1.785233 15.1479 4.559973</span>
+<span class="r-out co"><span class="r-pr">#&gt;</span> iore.deS 1.785233 15.1479 4.559973</span>
+<span class="r-in"> <span class="co"># }</span></span>
+<span class="r-in"></span>
+</code></pre></div>
+ </div>
</div>
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