diff options
Diffstat (limited to 'test.log')
| -rw-r--r-- | test.log | 48 |
1 files changed, 32 insertions, 16 deletions
@@ -7,14 +7,14 @@ Loading required package: parallel ✔ | 5 | Calculation of Akaike weights ✔ | 2 | Export dataset for reading into CAKE ✔ | 12 | Confidence intervals and p-values [1.0s] -✔ | 1 12 | Dimethenamid data from 2018 [31.0s] +✔ | 1 12 | Dimethenamid data from 2018 [31.2s] ──────────────────────────────────────────────────────────────────────────────── Skip (test_dmta.R:98:3): Different backends get consistent results for SFO-SFO3+, dimethenamid data Reason: Fitting this ODE model with saemix takes about 15 minutes on my system ──────────────────────────────────────────────────────────────────────────────── ✔ | 14 | Error model fitting [4.7s] ✔ | 5 | Time step normalisation -✔ | 4 | Calculation of FOCUS chi2 error levels [0.5s] +✔ | 4 | Calculation of FOCUS chi2 error levels [0.6s] ✔ | 14 | Results for FOCUS D established in expertise for UBA (Ranke 2014) [0.8s] ✔ | 4 | Test fitting the decline of metabolites from their maximum [0.3s] ✔ | 1 | Fitting the logistic model [0.2s] @@ -25,27 +25,43 @@ Reason: Fitting with saemix takes around 10 minutes when using deSolve ──────────────────────────────────────────────────────────────────────────────── ✔ | 3 | Test dataset classes mkinds and mkindsg ✔ | 10 | Special cases of mkinfit calls [0.4s] -✔ | 3 | mkinfit features [0.6s] -✔ | 8 | mkinmod model generation and printing [0.2s] -✔ | 3 | Model predictions with mkinpredict [0.3s] -✔ | 16 | Evaluations according to 2015 NAFTA guidance [1.4s] -✔ | 9 | Nonlinear mixed-effects models with nlme [8.0s] -✔ | 16 | Plotting [1.3s] +✔ | 3 | mkinfit features [0.7s] +✔ | 8 | mkinmod model generation and printing [0.3s] +✔ | 3 | Model predictions with mkinpredict [0.4s] +✔ | 16 | Evaluations according to 2015 NAFTA guidance [1.5s] +✔ | 9 | Nonlinear mixed-effects models with nlme [8.2s] +✔ | 5 16 | Plotting [10.5s] +──────────────────────────────────────────────────────────────────────────────── +Warning (test_plot.R:48:3): Plotting mkinfit, mmkin and mixed model objects is reproducible +Adding new file snapshot: 'tests/testhat/_snaps/mixed-model-fit-for-mmkin-object.svg' + +Warning (test_plot.R:51:3): Plotting mkinfit, mmkin and mixed model objects is reproducible +Adding new file snapshot: 'tests/testhat/_snaps/mixed-model-fit-for-saem-object-with-saemix-transformations.svg' + +Warning (test_plot.R:56:3): Plotting mkinfit, mmkin and mixed model objects is reproducible +Adding new file snapshot: 'tests/testhat/_snaps/mixed-model-fit-for-nlme-object.svg' + +Warning (test_plot.R:64:3): Plotting mkinfit, mmkin and mixed model objects is reproducible +Adding new file snapshot: 'tests/testhat/_snaps/mixed-model-fit-for-saem-object-with-mkin-transformations.svg' + +Warning (test_plot.R:68:3): Plotting mkinfit, mmkin and mixed model objects is reproducible +Adding new file snapshot: 'tests/testhat/_snaps/plot-errmod-with-focus-d-obs-eigen.svg' +──────────────────────────────────────────────────────────────────────────────── ✔ | 4 | Residuals extracted from mkinfit models -✔ | 23 | saemix parent models [26.7s] -✔ | 2 | Complex test case from Schaefer et al. (2007) Piacenza paper [1.4s] -✔ | 7 | Fitting the SFORB model [3.7s] +✔ | 23 | saemix parent models [28.9s] +✔ | 2 | Complex test case from Schaefer et al. (2007) Piacenza paper [1.5s] +✔ | 7 | Fitting the SFORB model [3.8s] ✔ | 1 | Summaries of old mkinfit objects ✔ | 4 | Summary [0.1s] -✔ | 4 | Results for synthetic data established in expertise for UBA (Ranke 2014) [2.1s] -✔ | 9 | Hypothesis tests [8.1s] -✔ | 4 | Calculation of maximum time weighted average concentrations (TWAs) [2.3s] +✔ | 4 | Results for synthetic data established in expertise for UBA (Ranke 2014) [2.2s] +✔ | 9 | Hypothesis tests [8.2s] +✔ | 4 | Calculation of maximum time weighted average concentrations (TWAs) [2.2s] ══ Results ═════════════════════════════════════════════════════════════════════ -Duration: 99.1 s +Duration: 111.6 s ── Skipped tests ────────────────────────────────────────────────────────────── • Fitting this ODE model with saemix takes about 15 minutes on my system (1) • Fitting with saemix takes around 10 minutes when using deSolve (1) -[ FAIL 0 | WARN 0 | SKIP 2 | PASS 221 ] +[ FAIL 0 | WARN 5 | SKIP 2 | PASS 221 ] |