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@@ -10,7 +10,7 @@
<meta name="author" content="Johannes Ranke" />
-<meta name="date" content="2015-06-22" />
+<meta name="date" content="2015-06-23" />
<title>Example evaluation of FOCUS Example Dataset D</title>
@@ -64,7 +64,7 @@ img {
<div id="header">
<h1 class="title">Example evaluation of FOCUS Example Dataset D</h1>
<h4 class="author"><em>Johannes Ranke</em></h4>
-<h4 class="date"><em>2015-06-22</em></h4>
+<h4 class="date"><em>2015-06-23</em></h4>
</div>
@@ -117,9 +117,9 @@ print(FOCUS_2006_D)</code></pre>
## 43 m1 120 25.15
## 44 m1 120 33.31</code></pre>
<p>Next we specify the degradation model: The parent compound degrades with simple first-order kinetics (SFO) to one metabolite named m1, which also degrades with SFO kinetics.</p>
-<p>The call to mkinmod returns a degradation model. The differential equations represented in R code can be found in the character vector <code>$diffs</code> of the <code>mkinmod</code> object. If the gcc compiler is installed and functional, the differential equation model will be compiled from auto-generated C code.</p>
+<p>The call to mkinmod returns a degradation model. The differential equations represented in R code can be found in the character vector <code>$diffs</code> of the <code>mkinmod</code> object. If a C compiler (gcc) is installed and functional, the differential equation model will be compiled from auto-generated C code.</p>
<pre class="r"><code>SFO_SFO &lt;- mkinmod(parent = mkinsub(&quot;SFO&quot;, &quot;m1&quot;), m1 = mkinsub(&quot;SFO&quot;))</code></pre>
-<pre><code>## Compiling differential equation model from auto-generated C code...</code></pre>
+<pre><code>## Successfully compiled differential equation model from auto-generated C code.</code></pre>
<pre class="r"><code>print(SFO_SFO$diffs)</code></pre>
<pre><code>## parent
## &quot;d_parent = - k_parent_sink * parent - k_parent_m1 * parent&quot;
@@ -137,8 +137,8 @@ print(FOCUS_2006_D)</code></pre>
<pre class="r"><code>summary(fit)</code></pre>
<pre><code>## mkin version: 0.9.37
## R version: 3.2.1
-## Date of fit: Mon Jun 22 23:02:24 2015
-## Date of summary: Mon Jun 22 23:02:25 2015
+## Date of fit: Tue Jun 23 11:42:55 2015
+## Date of summary: Tue Jun 23 11:42:55 2015
##
## Equations:
## d_parent = - k_parent_sink * parent - k_parent_m1 * parent
@@ -146,7 +146,7 @@ print(FOCUS_2006_D)</code></pre>
##
## Model predictions using solution type deSolve
##
-## Fitted with method Port using 153 model solutions performed in 0.772 s
+## Fitted with method Port using 153 model solutions performed in 0.719 s
##
## Weighting: none
##

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