| Age | Commit message (Collapse) | Author | Files | Lines | |
|---|---|---|---|---|---|
| 2016-06-28 | Build log for v0.9.44v0.9.44 | Johannes Ranke | 1 | -1/+6 | |
| 2016-06-28 | Bump version for new release, rebuild static docs | Johannes Ranke | 48 | -217/+212 | |
| The test test_FOMC_ill-defined leads to errors on several architectures/distributions, as apparent from CRAN checks, so we need a new release. Static documentation rebuilt by staticdocs::build_site() | |||||
| 2016-06-28 | Static documentation rebuilt by staticdocs::build_site() | Johannes Ranke | 48 | -244/+228 | |
| 2016-06-28 | Test the package using devtools to get a test.log | Johannes Ranke | 2 | -9/+19 | |
| 2016-06-28 | Skip testing for warning for ill-defined FOMC fits | Johannes Ranke | 1 | -0/+2 | |
| This caused the test suite to fail on r-forge for v0.9.43, obviously no warning was produced in one of the two expectations | |||||
| 2016-06-28 | Attempts to reduce vignette size | Johannes Ranke | 8 | -66/+86 | |
| Reducing the size of some figures and switching of retina figures in the preamble only gives a small decrease in vignette size, but may be enough to get the size of the doc directory below 5 MB to avoid the NOTE in the corresponding check (which I did not get locally, nor on winbuilder using r-devel. | |||||
| 2016-06-28 | Bump version after release to CRAN | Johannes Ranke | 1 | -1/+1 | |
| 2016-06-28 | Build log of the package just submitted to CRANv0.9.43 | Johannes Ranke | 1 | -1/+1 | |
| 2016-06-28 | Static documentation rebuilt by staticdocs::build_site() | Johannes Ranke | 14 | -105/+105 | |
| 2016-06-28 | Update NEWS | Johannes Ranke | 1 | -2/+2 | |
| 2016-06-28 | The location of my local svn directory has changed | Johannes Ranke | 1 | -1/+1 | |
| 2016-06-28 | Static documentation rebuilt by staticdocs::build_site() | Johannes Ranke | 14 | -108/+108 | |
| 2016-06-28 | Avoid multicore fits in vignettes for passing CRAN checks | Johannes Ranke | 59 | -650/+1636 | |
| Also a small fix to the FOCUS Z vignette, and an update of the static documentation generated by staticdocs. | |||||
| 2016-06-28 | Convenience wrapper plot_sep, further vignette updates | Johannes Ranke | 7 | -123/+108 | |
| 2016-06-28 | Do not watch vignettes for builds without rebuilding them | Johannes Ranke | 1 | -1/+1 | |
| This avoids the situation that a new function is needed in a vignette but the first thing that the build tries to do is building it. | |||||
| 2016-06-27 | Bump version for publication, update staticdocs | Johannes Ranke | 1 | -2/+2 | |
| 2016-06-27 | Complete mkin vignette, update FOCUS L vignette | Johannes Ranke | 6 | -467/+554 | |
| The mkin vignette now describes how confidence intervals and the t-test are calculated. The FOCUS L vignette is updated with the new floating toc provided by the current rmarkdown package, and also uses current, improved mkin functionality. | |||||
| 2016-06-27 | Improve listing of weights in output, update NEWS | Johannes Ranke | 4 | -11/+23 | |
| 2016-06-27 | Show chi2 in plot.mkinfit, round with signif | Johannes Ranke | 5 | -13/+40 | |
| 2016-06-25 | Fix the plot margins for combined plots | Johannes Ranke | 5 | -11/+49 | |
| 2016-06-25 | Now the old behaviour is restored for compatibility reasons | Johannes Ranke | 3 | -16/+26 | |
| When observed variables are not shown in separate plots, the residual plot is shown in the lower third of the total plotting area | |||||
| 2016-06-25 | Working state, but not backwards compatible | Johannes Ranke | 5 | -69/+134 | |
| In this commit, the separatation of plots for observed variables works. The formatting should be improved. However, in gmkin, plotting with show_residuals = TRUE is used, and the GUI expects that the residual plot is below the main plot. This behaviour should be restored. | |||||
| 2016-06-24 | Convert main vignette to Rmd/html, add_err(), fixes | Johannes Ranke | 11 | -106/+581 | |
| 2016-06-24 | Typo | Johannes Ranke | 1 | -1/+1 | |
| 2016-06-17 | Change the title of the package, small bugfix | Johannes Ranke | 3 | -12/+15 | |
| 2016-06-17 | Remove misplaced comment | Johannes Ranke | 1 | -4/+1 | |
| 2016-06-09 | Fix a bug in the listing of formation fractions | Johannes Ranke | 3 | -5/+9 | |
| The bug could only occur if a parent compound with a metabolite would end in the letter 'f' and was therefore not noticed earlier | |||||
| 2016-04-21 | Avoid unnecessary stop in edge case, improve warnings | Johannes Ranke | 6 | -11/+69 | |
| mkinfit: Do not error out in cases where the fit converges, but the Jacobian for the untransformed model cost can not be estimated. Give a warning instead and return NA for the t-test results. summary.mkinfit: Give a warning message when the covariance matrix can not be obtained. A test has been added to containing such an edge case to check that the warnings are correctly issued and the fit does not terminate. | |||||
| 2016-03-25 | Remove outdated reference to the inline package | Johannes Ranke | 3 | -4/+9 | |
| 2016-03-24 | Static documentation rebuilt by staticdocs::build_site()v0.9.42 | Johannes Ranke | 47 | -617/+440 | |
| 2016-03-24 | Address feedback from CRAN submission | Johannes Ranke | 41 | -220/+411 | |
| - Put the CRAN URL that the badge points to into canonical form. I had missed the requirement to use the canonical form before, as the R CMD check message complained about a (possibily) invalid URL, so I overlooked the explanation later in the check log. Thanks to Uwe for his patience. Fix checked with winbuilder. - Slightly reduced the build time for the compiled_models vignette by skipping the warm-up. 3 repetitions are necessary for the autoplot method to work | |||||
| 2016-03-23 | Static documentation rebuilt by staticdocs::build_site() | Johannes Ranke | 13 | -61/+61 | |
| 2016-03-23 | Added 'from_max_mean' to 'mkinfit'. | Johannes Ranke | 54 | -225/+259 | |
| - Now it is easier to do decline kinetics from the maximum occurrence - Static documentation rebuilt by staticdocs::build_site() - Fixed an URL in the README, thanks to the win-builder check with R-devel | |||||
| 2015-12-10 | Improve print method for mkinmod | Johannes Ranke | 2 | -2/+5 | |
| 2015-12-09 | Improve mkinmod error message for missing target compartment definition | Johannes Ranke | 2 | -0/+3 | |
| Closes #6. | |||||
| 2015-12-09 | Static documentation rebuilt by staticdocs::build_site() | Johannes Ranke | 17 | -95/+79 | |
| 2015-12-09 | Some updates and simplifications of the README | Johannes Ranke | 2 | -33/+10 | |
| 2015-11-13 | Add plots to compiled_models vignette, rebuild staticdocs | Johannes Ranke | 51 | -207/+238 | |
| 2015-11-13 | Bump version, change to version number format as shown in summaries | Johannes Ranke | 2 | -2/+6 | |
| 2015-11-09 | Update staticdocsv0.9-41 | Johannes Ranke | 13 | -106/+79 | |
| 2015-11-09 | Exclude more mkinmod examples, as winbuilder NOTEs > 5 s | Johannes Ranke | 1 | -1/+1 | |
| 2015-11-09 | Vignettes rebuilt by staticdocs::build_site() for static documentation on ↵ | Johannes Ranke | 14 | -54/+212 | |
| r-forge | |||||
| 2015-11-09 | Rebuild vignettes and static documentation | Johannes Ranke | 70 | -41/+16302 | |
| 2015-11-09 | Re-add the compiled models vignette | Johannes Ranke | 1 | -0/+101 | |
| This was accidentally deleted in 438a889c37ffdf8f0c6585092da6abdb63b4575e on June 30! | |||||
| 2015-11-09 | Export print.mkinds and rebuild vignettes | Johannes Ranke | 7 | -7/+13 | |
| 2015-11-09 | Do not include unnecessary mathjax in README.html | Johannes Ranke | 2 | -10/+1 | |
| 2015-11-06 | Improve formatting of summary | Johannes Ranke | 1 | -4/+4 | |
| 2015-10-24 | Improve printing method for mkinmod | Johannes Ranke | 1 | -1/+1 | |
| 2015-10-24 | Sort sampling times in mkinds | Johannes Ranke | 1 | -1/+1 | |
| 2015-10-21 | Avoid an error printing old mkinfit summaries | Johannes Ranke | 2 | -5/+14 | |
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index : mkin | |
| Fitting kinetic models to chemical degradation data (also on github) | Johannes Ranke |
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