From 7875935fdfc3c55e0ef328b3c3a4512a30011df1 Mon Sep 17 00:00:00 2001 From: Johannes Ranke Date: Wed, 23 Mar 2016 17:03:09 +0100 Subject: Added 'from_max_mean' to 'mkinfit'. - Now it is easier to do decline kinetics from the maximum occurrence - Static documentation rebuilt by staticdocs::build_site() - Fixed an URL in the README, thanks to the win-builder check with R-devel --- man/mkinfit.Rd | 8 ++++++++ 1 file changed, 8 insertions(+) (limited to 'man/mkinfit.Rd') diff --git a/man/mkinfit.Rd b/man/mkinfit.Rd index a75d23ac..e4041755 100644 --- a/man/mkinfit.Rd +++ b/man/mkinfit.Rd @@ -21,6 +21,7 @@ mkinfit(mkinmod, observed, parms.ini = "auto", state.ini = "auto", fixed_parms = NULL, fixed_initials = names(mkinmod$diffs)[-1], + from_max_mean = FALSE, solution_type = c("auto", "analytical", "eigen", "deSolve"), method.ode = "lsoda", use_compiled = "auto", @@ -85,6 +86,13 @@ mkinfit(mkinmod, observed, be excluded from the optimisation. Defaults to all state variables except for the first one. } + \item{from_max_mean}{ + If this is set to TRUE, and the model has only one observed variable, then + data before the time of the maximum observed value (after averaging for each + sampling time) are discarded, and this time is subtracted from all + remaining time values, so the time of the maximum observed mean value is + the new time zero. + } \item{solution_type}{ If set to "eigen", the solution of the system of differential equations is based on the spectral decomposition of the coefficient matrix in cases that -- cgit v1.2.1