aboutsummaryrefslogtreecommitdiff
path: root/docs/reference/mkinresplot.html
blob: fb9ab40db67fe60ff9252d44ab1dbfc002166c76 (plain) (blame)
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
57
58
59
60
61
62
63
64
65
66
67
68
69
70
71
72
73
74
75
76
77
78
79
80
81
82
83
84
85
86
87
88
89
90
91
92
93
94
95
96
97
98
99
100
101
102
103
104
105
106
107
108
109
110
111
112
113
114
115
116
117
118
119
120
121
122
123
124
125
126
127
128
129
130
131
132
133
134
135
136
137
138
139
140
141
142
143
144
145
146
147
148
149
150
151
152
153
154
155
156
157
158
159
160
161
162
163
164
165
166
<!-- Generated by pkgdown: do not edit by hand -->
<!DOCTYPE html>
<html>
  <head>
  <meta charset="utf-8">
<meta http-equiv="X-UA-Compatible" content="IE=edge">
<meta name="viewport" content="width=device-width, initial-scale=1.0">

<title>mkinresplot. mkin</title>

<!-- jquery -->
<script src="https://code.jquery.com/jquery-3.1.0.min.js" integrity="sha384-nrOSfDHtoPMzJHjVTdCopGqIqeYETSXhZDFyniQ8ZHcVy08QesyHcnOUpMpqnmWq" crossorigin="anonymous"></script>

<!-- Bootstrap -->
<link href="https://maxcdn.bootstrapcdn.com/bootswatch/3.3.7/cerulean/bootstrap.min.css" rel="stylesheet" crossorigin="anonymous">

<script src="https://maxcdn.bootstrapcdn.com/bootstrap/3.3.7/js/bootstrap.min.js" integrity="sha384-Tc5IQib027qvyjSMfHjOMaLkfuWVxZxUPnCJA7l2mCWNIpG9mGCD8wGNIcPD7Txa" crossorigin="anonymous"></script>

<!-- Font Awesome icons -->
<link href="https://maxcdn.bootstrapcdn.com/font-awesome/4.6.3/css/font-awesome.min.css" rel="stylesheet" integrity="sha384-T8Gy5hrqNKT+hzMclPo118YTQO6cYprQmhrYwIiQ/3axmI1hQomh7Ud2hPOy8SP1" crossorigin="anonymous">


<!-- pkgdown -->
<link href="../pkgdown.css" rel="stylesheet">
<script src="../pkgdown.js"></script>

<!-- mathjax -->
<script src='https://cdn.mathjax.org/mathjax/latest/MathJax.js?config=TeX-AMS-MML_HTMLorMML'></script>

<!--[if lt IE 9]>
<script src="https://oss.maxcdn.com/html5shiv/3.7.3/html5shiv.min.js"></script>
<script src="https://oss.maxcdn.com/respond/1.4.2/respond.min.js"></script>
<![endif]-->
  </head>

  <body>
    <div class="container">
      <header>
      
<div class="navbar navbar-default  navbar-fixed-top" role="navigation">
  <div class="container">
    <div class="navbar-header">
      <button type="button" class="navbar-toggle collapsed" data-toggle="collapse" data-target="#navbar">
        <span class="icon-bar"></span>
        <span class="icon-bar"></span>
        <span class="icon-bar"></span>
      </button>
      <a class="navbar-brand" href="../index.html">mkin</a>
    </div>
    <div id="navbar" class="navbar-collapse collapse">
      <ul class="nav navbar-nav">
        <li>
  <a href="../index.html">Home</a>
</li>
<li>
  <a href="../reference/index.html">Reference</a>
</li>
      </ul>
      <ul class="nav navbar-nav navbar-right">
        <li>
  <a href="https://github.com/jranke/mkin">
    <span class="fa fa-github fa-lg"></span>
     
  </a>
</li>
      </ul>
    </div><!--/.nav-collapse -->
  </div><!--/.container -->
</div><!--/.navbar -->
      
      </header>

      <div class="page-header">
  <h1>
</h1>
</div>

<div class="row">
  <div class="col-md-9">
    
    <p>This function plots the residuals for the specified subset of the 
  observed variables from an mkinfit object. A combined plot of the fitted
  model and the residuals can be obtained using <code>plot.mkinfit</code>
  using the argument <code>show_residuals = TRUE</code>.</p>
    

    <pre><span class='fu'>mkinresplot</span>(<span class='no'>object</span>,
    <span class='kw'>obs_vars</span> <span class='kw'>=</span> <span class='fu'>names</span>(<span class='no'>object</span>$<span class='no'>mkinmod</span>$<span class='no'>map</span>),
    <span class='kw'>xlim</span> <span class='kw'>=</span> <span class='fu'>c</span>(<span class='fl'>0</span>, <span class='fl'>1.1</span> * <span class='fu'>max</span>(<span class='no'>object</span>$<span class='no'>data</span>$<span class='no'>time</span>)),
    <span class='kw'>xlab</span> <span class='kw'>=</span> <span class='st'>"Time"</span>, <span class='kw'>ylab</span> <span class='kw'>=</span> <span class='st'>"Residual"</span>,
    <span class='kw'>maxabs</span> <span class='kw'>=</span> <span class='st'>"auto"</span>, <span class='kw'>legend</span> <span class='kw'>=</span> <span class='fl'>TRUE</span>, <span class='kw'>lpos</span> <span class='kw'>=</span> <span class='st'>"topright"</span>, <span class='no'>...</span>)</pre>
    
    <h2>Arguments</h2>
    <dl class="dl-horizontal">
      <dt>object</dt>
      <dd>
    A fit represented in an <code>mkinfit</code> object.
</dd>
      <dt>obs_vars</dt>
      <dd>
    A character vector of names of the observed variables for which residuals
    should be plotted. Defaults to all observed variables in the model
</dd>
      <dt>xlim</dt>
      <dd>
    plot range in x direction.
  </dd>
      <dt>xlab</dt>
      <dd>
    Label for the x axis. Defaults to &quot;Time [days]&quot;.
</dd>
      <dt>ylab</dt>
      <dd>
    Label for the y axis. Defaults to &quot;Residual [% of applied radioactivity]&quot;.
</dd>
      <dt>maxabs</dt>
      <dd>
    Maximum absolute value of the residuals. This is used for the scaling of
    the y axis and defaults to &quot;auto&quot;.
</dd>
      <dt>legend</dt>
      <dd>
    Should a legend be plotted? Defaults to &quot;TRUE&quot;.
</dd>
      <dt>lpos</dt>
      <dd> 
    Where should the legend be placed? Default is &quot;topright&quot;. Will be passed on to
		<code>legend</code>. </dd>
      <dt>&amp;#8230;</dt>
      <dd>
   further arguments passed to <code>plot</code>.
</dd>
    </dl>
    
    <div class="Value">
      <h2>Value</h2>

      <p>Nothing is returned by this function, as it is called for its side effect, namely to produce a plot.</p>
    </div>

    <div class="See also">
      <h2>See also</h2>

      <p><code>mkinplot</code>, for a way to plot the data and the fitted lines of the
 mkinfit object.</p>
    </div>
    
    <h2 id="examples">Examples</h2>
    <pre class="examples"><div class='input'><span class='no'>model</span> <span class='kw'>&lt;-</span> <span class='fu'>mkinmod</span>(<span class='kw'>parent</span> <span class='kw'>=</span> <span class='fu'>mkinsub</span>(<span class='st'>"SFO"</span>, <span class='st'>"m1"</span>), <span class='kw'>m1</span> <span class='kw'>=</span> <span class='fu'>mkinsub</span>(<span class='st'>"SFO"</span>))</div><div class='output'><strong class='text-info'>Successfully compiled differential equation model from auto-generated C code.</strong></div><div class='input'><span class='no'>fit</span> <span class='kw'>&lt;-</span> <span class='fu'>mkinfit</span>(<span class='no'>model</span>, <span class='no'>FOCUS_2006_D</span>, <span class='kw'>quiet</span> <span class='kw'>=</span> <span class='fl'>TRUE</span>)
<span class='fu'>mkinresplot</span>(<span class='no'>fit</span>, <span class='st'>"m1"</span>)</div><img src='unknown-4.png' alt='' width='540' height='400' /></pre>
  </div>
  <div class="col-md-3">
    <h2>Author</h2>
    
  Johannes Ranke

  </div>
</div>

      <footer>
      <p>Built by <a href="http://hadley.github.io/pkgdown/">pkgdown</a>. Styled with <a href="http://getbootstrap.com">Bootstrap 3</a>.</p>
      </footer>
   </div>

  </body>
</html>

Contact - Imprint