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ℹ Testing mkin
✔ | F W S OK | Context
✔ | 5 | AIC calculation
✔ | 5 | Analytical solutions for coupled models [1.5s]
✔ | 5 | Calculation of Akaike weights
✔ | 3 | Export dataset for reading into CAKE
✔ | 6 | Use of precompiled symbols in mkinpredict [3.1s]
✔ | 12 | Confidence intervals and p-values
✔ | 1 12 | Dimethenamid data from 2018 [13.0s]
✔ | 14 | Error model fitting [2.6s]
✔ | 5 | Time step normalisation
✔ | 4 | Calculation of FOCUS chi2 error levels
✔ | 14 | Results for FOCUS D established in expertise for UBA (Ranke 2014)
✔ | 4 | Test fitting the decline of metabolites from their maximum
✔ | 1 | Fitting the logistic model
✔ | 10 | Batch fitting and diagnosing hierarchical kinetic models [19.7s]
✔ | 2 16 | Nonlinear mixed-effects models [144.7s]
✔ | 3 | Test dataset classes mkinds and mkindsg
✔ | 10 | Special cases of mkinfit calls
✔ | 3 | mkinfit features
✔ | 8 | mkinmod model generation and printing
✔ | 3 | Model predictions with mkinpredict
✔ | 12 | Multistart method for saem.mmkin models [23.3s]
✔ | 16 | Evaluations according to 2015 NAFTA guidance [1.5s]
✔ | 9 | Nonlinear mixed-effects models with nlme [3.7s]
✔ | 15 | Plotting [4.5s]
✔ | 4 | Residuals extracted from mkinfit models
✔ | 1 38 | saemix parent models [34.8s]
✔ | 2 | Complex test case from Schaefer et al. (2007) Piacenza paper
✔ | 11 | Processing of residue series
✔ | 10 | Fitting the SFORB model [1.7s]
✔ | 1 | Summaries of old mkinfit objects
✔ | 5 | Summary
✔ | 4 | Results for synthetic data established in expertise for UBA (Ranke 2014)
✔ | 9 | Hypothesis tests [2.9s]
✔ | 4 | Calculation of maximum time weighted average concentrations (TWAs)
✔ | 2 | water-sediment
══ Results ═════════════════════════════════════════════════════════════════════
Duration: 262.3 s
── Skipped tests (4) ───────────────────────────────────────────────────────────
• Fitting this ODE model with saemix takes about 5 minutes on my new system
(1): 'test_dmta.R:88:3'
• Fitting with saemix takes around 10 minutes when using deSolve (1):
'test_mixed.R:80:3'
• This is seldom used, so save some time (1): 'test_mixed.R:133:3'
• This still takes almost 2.5 minutes although we do not solve ODEs (1):
'test_saemix_parent.R:143:3'
[ FAIL 0 | WARN 0 | SKIP 4 | PASS 285 ]
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