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-rwxr-xr-xchm/00Index.html26
-rwxr-xr-xchm/Rchm.css25
-rwxr-xr-xchm/calplot.html94
-rwxr-xr-xchm/calpredict.html106
-rwxr-xr-xchm/chemCal.chmbin25115 -> 0 bytes
-rwxr-xr-xchm/chemCal.hhp17
-rwxr-xr-xchm/chemCal.toc51
-rwxr-xr-xchm/din32645.html44
-rwxr-xr-xchm/logo.jpgbin8793 -> 0 bytes
-rwxr-xr-xchm/pahCalibration.html48
10 files changed, 0 insertions, 411 deletions
diff --git a/chm/00Index.html b/chm/00Index.html
deleted file mode 100755
index 89e77ff..0000000
--- a/chm/00Index.html
+++ /dev/null
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-<html><head><title>Calibration for analytical chemistry</title>
-<link rel="stylesheet" type="text/css" href="Rchm.css">
-</head><body>
-<h1>Calibration for analytical chemistry
-<img class="toplogo" src="logo.jpg" alt="[R logo]"></h1>
-
-<hr>
-
-<object type="application/x-oleobject" classid="clsid:1e2a7bd0-dab9-11d0-b93a-00c04fc99f9e">
-<param name="keyword" value=".. contents">
-</object>
-
-<h2>Help pages for package `chemCal' version 0.01-2</h2>
-
-
-<table width="100%">
-<tr><td width="25%"><a href="calplot.html">calplot</a></td>
-<td>Plot calibration graphs</td></tr>
-<tr><td width="25%"><a href="calpredict.html">calpredict</a></td>
-<td>Estimate measurement results including confidence intervals</td></tr>
-<tr><td width="25%"><a href="din32645.html">din32645</a></td>
-<td>Calibration data from DIN 32645</td></tr>
-<tr><td width="25%"><a href="pahCalibration.html">pahCalibration</a></td>
-<td>Calibration data for HPLC measurement of 4 PAH</td></tr>
-</table>
-</body></html>
diff --git a/chm/Rchm.css b/chm/Rchm.css
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index badd579..0000000
--- a/chm/Rchm.css
+++ /dev/null
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-BODY{ background: white;
- color: black }
-
-A:link{ background: white;
- color: blue }
-A:visited{ background: white;
- color: rgb(50%, 0%, 50%) }
-
-H1{ background: white;
- color: rgb(55%, 55%, 55%);
- font-family: monospace;
- font-size: large;
- text-align: center }
-
-H2{ background: white;
- color: rgb(0%, 0%, 100%);
- font-family: monospace;
- text-align: center }
-
-H3{ background: white;
- color: rgb(40%, 40%, 40%);
- font-family: monospace }
-
-IMG.toplogo{ vertical-align: middle }
-
diff --git a/chm/calplot.html b/chm/calplot.html
deleted file mode 100755
index a2b8158..0000000
--- a/chm/calplot.html
+++ /dev/null
@@ -1,94 +0,0 @@
-<html><head><title>Plot calibration graphs</title>
-<link rel="stylesheet" type="text/css" href="Rchm.css">
-</head>
-<body>
-
-<table width="100%"><tr><td>calplot(chemCal)</td><td align="right">R Documentation</td></tr></table><object type="application/x-oleobject" classid="clsid:1e2a7bd0-dab9-11d0-b93a-00c04fc99f9e">
-<param name="keyword" value="R: calplot">
-<param name="keyword" value=" Plot calibration graphs">
-</object>
-
-
-<h2>Plot calibration graphs</h2>
-
-
-<h3>Description</h3>
-
-<p>
-Produce graphics of calibration data, the fitted model as well
-as prediction and confidence intervals.
-</p>
-
-
-<h3>Usage</h3>
-
-<pre>
- calplot(x,y,intercept=FALSE,measurand="substance x",xunit="mg/L",yunit="Area",level=0.95)
-</pre>
-
-
-<h3>Arguments</h3>
-
-<table summary="R argblock">
-<tr valign="top"><td><code>x</code></td>
-<td>
-A vector of x values.
-</td></tr>
-<tr valign="top"><td><code>y</code></td>
-<td>
-A vector of y values.
-</td></tr>
-<tr valign="top"><td><code>intercept</code></td>
-<td>
-A boolean describing if the calibration curve is to be forced
-through zero.
-</td></tr>
-<tr valign="top"><td><code>measurand</code></td>
-<td>
-The name of what is being measured as a character vector.
-</td></tr>
-<tr valign="top"><td><code>xunit</code></td>
-<td>
-The unit of the given values on the x axis as a character vector.
-</td></tr>
-<tr valign="top"><td><code>yunit</code></td>
-<td>
-The unit of the y axis as a character vector. Defaults to "Area".
-</td></tr>
-<tr valign="top"><td><code>level</code></td>
-<td>
-The confidence level of the confidence and prediction bands. Defaults to
-0.95.
-</td></tr>
-</table>
-
-<h3>Value</h3>
-
-<p>
-A linear model object for y ~ x. You will also get a plot of the calibration
-data, of your fitted model as well as lines showing the confidence limits and
-the prediction limits.</p>
-
-<h3>Author(s)</h3>
-
-<p>
-Johannes Ranke
-<a href="mailto:jranke@uni-bremen.de">jranke@uni-bremen.de</a>
-<a href="http://www.uft.uni-bremen.de/chemie/ranke">http://www.uft.uni-bremen.de/chemie/ranke</a>
-</p>
-
-
-<h3>Examples</h3>
-
-<pre>
-data(pahCalibration)
-attach(pahCalibration)
-## Not run: calplot(conc,phenanthrene,"Phenanthrene","mg/L")
-detach(pahCalibration)
-</pre>
-
-
-
-<hr><div align="center"><a href="00Index.html">[Package Contents]</a></div>
-
-</body></html>
diff --git a/chm/calpredict.html b/chm/calpredict.html
deleted file mode 100755
index dff8ec4..0000000
--- a/chm/calpredict.html
+++ /dev/null
@@ -1,106 +0,0 @@
-<html><head><title>Estimate measurement results including confidence intervals</title>
-<link rel="stylesheet" type="text/css" href="Rchm.css">
-</head>
-<body>
-
-<table width="100%"><tr><td>calpredict(chemCal)</td><td align="right">R Documentation</td></tr></table><object type="application/x-oleobject" classid="clsid:1e2a7bd0-dab9-11d0-b93a-00c04fc99f9e">
-<param name="keyword" value="R: calpredict">
-<param name="keyword" value=" Estimate measurement results including confidence intervals">
-</object>
-
-
-<h2>Estimate measurement results including confidence intervals</h2>
-
-
-<h3>Description</h3>
-
-<p>
-This function generates estimates for x values from y values, including
-a confidence interval for the x values. The formulas in this function used
-for prediction of concentrations from (replicate) measurements are taken from
-the "Handbook of Chemometrics and Qualimetrics Part A" by D. L. Massart,
-Vandeginste, B. G. M., Buydens, L. M. C., De Jong, S., Lewi, P. J. and
-Smeyers-Verbeke, J, Elsevier, Amsterdam, 1997 and from the EURACHEM/CITAC
-report on "Quantifying uncertainty in analytical measurement", 2000,
-pp. 111f.
-</p>
-
-
-<h3>Usage</h3>
-
-<pre>
- calpredict(yobs,xi,yi,xunit="",level=0.95,intercept=FALSE,syobs=FALSE)
-</pre>
-
-
-<h3>Arguments</h3>
-
-<table summary="R argblock">
-<tr valign="top"><td><code>yobs</code></td>
-<td>
-A numeric vector containing the observed data.
-</td></tr>
-<tr valign="top"><td><code>xi</code></td>
-<td>
-A vector of x values of the calibration.
-</td></tr>
-<tr valign="top"><td><code>yi</code></td>
-<td>
-A vector of y values of the calibration.
-</td></tr>
-<tr valign="top"><td><code>xunit</code></td>
-<td>
-The unit of the given values on the x axis as a character string.
-</td></tr>
-<tr valign="top"><td><code>level</code></td>
-<td>
-The desired confidence level for the confidence interval of the
-estimates. Defaults to 0.95.
-</td></tr>
-<tr valign="top"><td><code>intercept</code></td>
-<td>
-Logical value determining if an intercept is to be fitted or not.
-Default is FALSE.
-</td></tr>
-<tr valign="top"><td><code>syobs</code></td>
-<td>
-If TRUE, a standard deviation for the given y values is
-calculated, and the resulting confidence interval will
-include this variability (not validated yet). If FALSE (default), this
-standard deviation is not included in the
-confidence interval. If a numeric value is given,
-it is used for the standard deviation of "real samples",
-in addition to the standard deviation of the y values
-in the calibration (also not validated yet).
-</td></tr>
-</table>
-
-<h3>Value</h3>
-
-<p>
-A list containing the estimate, its standard deviation and its
-confidence interval.</p>
-
-<h3>Author(s)</h3>
-
-<p>
-Johannes Ranke
-<a href="mailto:jranke@uni-bremen.de">jranke@uni-bremen.de</a>
-<a href="http://www.uft.uni-bremen.de/chemie/ranke">http://www.uft.uni-bremen.de/chemie/ranke</a>
-</p>
-
-
-<h3>Examples</h3>
-
-<pre>
-data(pahCalibration)
-attach(pahCalibration)
-y &lt;- c(51.2,51.4,51.1,51.8)
-estimate &lt;- calpredict(y,conc,acenaphthene,xunit="mg/L")
-</pre>
-
-
-
-<hr><div align="center"><a href="00Index.html">[Package Contents]</a></div>
-
-</body></html>
diff --git a/chm/chemCal.chm b/chm/chemCal.chm
deleted file mode 100755
index df88b92..0000000
--- a/chm/chemCal.chm
+++ /dev/null
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diff --git a/chm/chemCal.hhp b/chm/chemCal.hhp
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index 3b1318b..0000000
--- a/chm/chemCal.hhp
+++ /dev/null
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-[OPTIONS]
-Auto Index=Yes
-Contents file=chemCal.toc
-Compatibility=1.1 or later
-Compiled file=chemCal.chm
-Default topic=00Index.html
-Display compile progress=No
-Full-text search=Yes
-Full text search stop list file=..\..\..\gnuwin32\help\R.stp
-
-
-[FILES]
-00Index.html
-calplot.html
-calpredict.html
-din32645.html
-pahCalibration.html
diff --git a/chm/chemCal.toc b/chm/chemCal.toc
deleted file mode 100755
index ab7c2f1..0000000
--- a/chm/chemCal.toc
+++ /dev/null
@@ -1,51 +0,0 @@
-<!DOCTYPE HTML PUBLIC "-//IETF//DTD HTML//EN">
-<HEAD></HEAD><HTML><BODY>
-<UL>
-<LI> <OBJECT type="text/sitemap">
-<param name="Name" value="Package chemCal: Contents">
-<param name="Local" value="00Index.html">
-</OBJECT>
-<LI> <OBJECT type="text/sitemap">
-<param name="Name" value="Package chemCal: R objects">
-</OBJECT>
-<UL>
-<LI> <OBJECT type="text/sitemap">
-<param name="Name" value="calplot">
-<param name="Local" value="calplot.html">
-</OBJECT>
-<LI> <OBJECT type="text/sitemap">
-<param name="Name" value="calpredict">
-<param name="Local" value="calpredict.html">
-</OBJECT>
-<LI> <OBJECT type="text/sitemap">
-<param name="Name" value="din32645">
-<param name="Local" value="din32645.html">
-</OBJECT>
-<LI> <OBJECT type="text/sitemap">
-<param name="Name" value="pahCalibration">
-<param name="Local" value="pahCalibration.html">
-</OBJECT>
-</UL>
-<LI> <OBJECT type="text/sitemap">
-<param name="Name" value="Package chemCal: Titles">
-</OBJECT>
-<UL>
-<LI> <OBJECT type="text/sitemap">
-<param name="Name" value="Calibration data for HPLC measurement of 4 PAH">
-<param name="Local" value="pahCalibration.html">
-</OBJECT>
-<LI> <OBJECT type="text/sitemap">
-<param name="Name" value="Calibration data from DIN 32645">
-<param name="Local" value="din32645.html">
-</OBJECT>
-<LI> <OBJECT type="text/sitemap">
-<param name="Name" value="Estimate measurement results including confidence intervals">
-<param name="Local" value="calpredict.html">
-</OBJECT>
-<LI> <OBJECT type="text/sitemap">
-<param name="Name" value="Plot calibration graphs">
-<param name="Local" value="calplot.html">
-</OBJECT>
-</UL>
-</UL>
-</BODY></HTML>
diff --git a/chm/din32645.html b/chm/din32645.html
deleted file mode 100755
index f0550f7..0000000
--- a/chm/din32645.html
+++ /dev/null
@@ -1,44 +0,0 @@
-<html><head><title>Calibration data from DIN 32645</title>
-<link rel="stylesheet" type="text/css" href="Rchm.css">
-</head>
-<body>
-
-<table width="100%"><tr><td>din32645(chemCal)</td><td align="right">R Documentation</td></tr></table><object type="application/x-oleobject" classid="clsid:1e2a7bd0-dab9-11d0-b93a-00c04fc99f9e">
-<param name="keyword" value="R: din32645">
-<param name="keyword" value=" Calibration data from DIN 32645">
-</object>
-
-
-<h2>Calibration data from DIN 32645</h2>
-
-
-<h3>Description</h3>
-
-<p>
-Sample dataset to test the package.
-</p>
-
-
-<h3>Usage</h3>
-
-<pre>data(pahCalibration)</pre>
-
-
-<h3>Format</h3>
-
-<p>
-A dataframe containing 10 rows of x and y values.
-</p>
-
-
-<h3>Source</h3>
-
-<p>
-<a href="http://www.uft.uni-bremen.de/chemie">http://www.uft.uni-bremen.de/chemie</a>
-</p>
-
-
-
-<hr><div align="center"><a href="00Index.html">[Package Contents]</a></div>
-
-</body></html>
diff --git a/chm/logo.jpg b/chm/logo.jpg
deleted file mode 100755
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--- a/chm/logo.jpg
+++ /dev/null
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diff --git a/chm/pahCalibration.html b/chm/pahCalibration.html
deleted file mode 100755
index 10d1774..0000000
--- a/chm/pahCalibration.html
+++ /dev/null
@@ -1,48 +0,0 @@
-<html><head><title>Calibration data for HPLC measurement of 4 PAH</title>
-<link rel="stylesheet" type="text/css" href="Rchm.css">
-</head>
-<body>
-
-<table width="100%"><tr><td>pahCalibration(chemCal)</td><td align="right">R Documentation</td></tr></table><object type="application/x-oleobject" classid="clsid:1e2a7bd0-dab9-11d0-b93a-00c04fc99f9e">
-<param name="keyword" value="R: pahCalibration">
-<param name="keyword" value=" Calibration data for HPLC measurement of 4 PAH">
-</object>
-
-
-<h2>Calibration data for HPLC measurement of 4 PAH</h2>
-
-
-<h3>Description</h3>
-
-<p>
-This dataset was produced during a course on trace analysis
-of organic contaminants. The data are far from perfect, but
-good enough to serve as an example.
-</p>
-
-
-<h3>Usage</h3>
-
-<pre>data(pahCalibration)</pre>
-
-
-<h3>Format</h3>
-
-<p>
-A dataframe containing the areas for the four polycyclic aromatic
-hydrocarbons (PAH) Acenaphthene, Phenanthrene, Anthracene and Pyrene.
-Each measurement of a standard solution makes up one row.
-</p>
-
-
-<h3>Source</h3>
-
-<p>
-<a href="http://www.uft.uni-bremen.de/chemie">http://www.uft.uni-bremen.de/chemie</a>
-</p>
-
-
-
-<hr><div align="center"><a href="00Index.html">[Package Contents]</a></div>
-
-</body></html>

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