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-rw-r--r--inst/doc/Makefile20
-rw-r--r--inst/doc/Rplots.ps1190
-rw-r--r--inst/doc/chemCal-001.eps1164
-rw-r--r--inst/doc/chemCal-001.pdf3102
-rw-r--r--inst/doc/chemCal-002.pdf4
-rw-r--r--inst/doc/chemCal.log31
-rw-r--r--inst/doc/chemCal.pdfbin133965 -> 133895 bytes
-rw-r--r--inst/doc/chemCal.tex12
8 files changed, 2765 insertions, 2758 deletions
diff --git a/inst/doc/Makefile b/inst/doc/Makefile
index 26fe678..9c5cd3a 100644
--- a/inst/doc/Makefile
+++ b/inst/doc/Makefile
@@ -1,21 +1,33 @@
# Makefile for Sweave documents containing both Latex and R code
# Author: Johannes Ranke <jranke@uni-bremen.de>
-# Last Change: 2006 Mai 11
+# Last Change: 2006 Mai 24
# based on the Makefile of Nicholas Lewin-Koh
# in turn based on work of Rouben Rostmaian
-# SVN: $Id: Makefile.rnoweb 50 2006-04-18 11:13:52Z ranke $
+# SVN: $Id: Makefile.rnoweb 62 2006-05-24 08:30:59Z ranke $
RNWFILES = $(wildcard *.Rnw)
TARGETS = $(patsubst %.Rnw,%.tex,$(RNWFILE)) $(patsubst %.Rnw,%.pdf,$(RNWFILES))
+RERUN = "(There were undefined references|Rerun to get (cross-references|the bars) right|Table widths have changed. Rerun LaTeX.|Linenumber reference failed)"
+RERUNBIB = "No file.*\.bbl|Citation.*undefined"
+
%.tex: %.Rnw
echo 'Sweave("$<")' | R --no-save --no-restore
%.pdf: %.tex
pdflatex $<
+ egrep -c $(RERUNBIB) $*.log && (bibtex $*;pdflatex $<); true
+ egrep $(RERUN) $*.log && (pdflatex $<) ; true
+ egrep $(RERUN) $*.log && (pdflatex $<) ; true
-all: $(TARGETS)
+all: all-recursive $(TARGETS)
-clean:
+clean: clean-recursive
rm -f *.aux *.log *.bbl *.blg *.brf *.cb *.ind *.idx *.ilg \
*.inx *.ps *.dvi *.toc *.out *.lot *~ *.lof *.ttt *.fff
+
+all-recursive:
+ for dir in $(wildcard *); do if [ -d $$dir ] && [ -f $$dir/Makefile ]; then cd $$dir; $(MAKE) all; cd ..; fi; done
+
+clean-recursive:
+ for dir in $(wildcard *); do if [ -d $$dir ] && [ -f $$dir/Makefile ]; then cd $$dir; $(MAKE) clean; cd ..; fi; done
diff --git a/inst/doc/Rplots.ps b/inst/doc/Rplots.ps
index c5e68ec..434ef02 100644
--- a/inst/doc/Rplots.ps
+++ b/inst/doc/Rplots.ps
@@ -123,39 +123,39 @@ o
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diff --git a/inst/doc/chemCal-002.pdf b/inst/doc/chemCal-002.pdf
index c649e08..262f50a 100644
--- a/inst/doc/chemCal-002.pdf
+++ b/inst/doc/chemCal-002.pdf
@@ -2,8 +2,8 @@
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diff --git a/inst/doc/chemCal.log b/inst/doc/chemCal.log
index 26ebd4a..237b975 100644
--- a/inst/doc/chemCal.log
+++ b/inst/doc/chemCal.log
@@ -1,4 +1,4 @@
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+This is pdfeTeX, Version 3.141592-1.21a-2.2 (Web2C 7.5.4) (format=pdflatex 2006.4.8) 24 MAY 2006 10:46
entering extended mode
**chemCal.tex
(./chemCal.tex
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\FV@OutFile=\write4
No file fancyvrb.cfg.
-) (/usr/share/R/share/texmf/upquote.sty
+) (/usr/share/texmf-tetex/tex/latex/upquote/upquote.sty
Package: upquote 2003/08/11 v1.1 Covington's upright-quote modification to verb
atim and verb
@@ -316,19 +316,14 @@ File: chemCal-002.pdf Graphic file (type pdf)
<use chemCal-002.pdf>
LaTeX Font Info: Try loading font information for TS1+aett on input line 75.
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+[2 <./chemCal-002.pdf>]
LaTeX Font Warning: Font shape `T1/aett/bx/n' undefined
(Font) using `T1/aett/m/n' instead on input line 106.
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97245 words of memory out of 1000000
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+ 6857 multiletter control sequences out of 10000+50000
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580 hyphenation exceptions out of 8191
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PDF statistics:
@@ -355,7 +350,7 @@ etex/fonts/type1/bluesky/cm/cmsy10.pfb></usr/share/texmf-tetex/fonts/type1/blue
sky/cm/cmmi5.pfb></usr/share/texmf-tetex/fonts/type1/bluesky/cm/cmmi7.pfb></usr
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texmf-tetex/fonts/type1/bluesky/cm/cmtt8.pfb></usr/share/texmf-tetex/fonts/type
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/cm/cmtt10.pfb></usr/share/texmf-tetex/fonts/type1/bluesky/cm/cmr10.pfb></usr/s
hare/texmf-tetex/fonts/type1/bluesky/cm/cmr12.pfb></usr/share/texmf-tetex/fonts
/type1/bluesky/cm/cmr17.pfb>
-Output written on chemCal.pdf (4 pages, 133965 bytes).
+Output written on chemCal.pdf (4 pages, 133895 bytes).
diff --git a/inst/doc/chemCal.pdf b/inst/doc/chemCal.pdf
index bee18f0..45a50eb 100644
--- a/inst/doc/chemCal.pdf
+++ b/inst/doc/chemCal.pdf
Binary files differ
diff --git a/inst/doc/chemCal.tex b/inst/doc/chemCal.tex
index 8887496..e26172f 100644
--- a/inst/doc/chemCal.tex
+++ b/inst/doc/chemCal.tex
@@ -73,13 +73,13 @@ $Prediction
[1] 5.865367
$`Standard Error`
-[1] 0.892611
+[1] 0.7288138
$Confidence
-[1] 2.478285
+[1] 2.023511
$`Confidence Limits`
-[1] 3.387082 8.343652
+[1] 3.841856 7.888878
\end{Soutput}
\begin{Sinput}
> inverse.predict(m, 90, ws = 0.145)
@@ -89,13 +89,13 @@ $Prediction
[1] 44.06025
$`Standard Error`
-[1] 2.829162
+[1] 2.310001
$Confidence
-[1] 7.855012
+[1] 6.41359
$`Confidence Limits`
-[1] 36.20523 51.91526
+[1] 37.64666 50.47384
\end{Soutput}
\end{Schunk}

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