From fb7ea47c774f67b8c26a6844f4ade8935a8653cc Mon Sep 17 00:00:00 2001 From: ranke Date: Wed, 24 May 2006 08:48:24 +0000 Subject: Tested my new Makefile distributed with 0.05-62 of the R vim plugin for Linux/Unix. git-svn-id: http://kriemhild.uft.uni-bremen.de/svn/chemCal@15 5fad18fb-23f0-0310-ab10-e59a3bee62b4 --- inst/doc/Makefile | 20 +- inst/doc/Rplots.ps | 1218 +++++++++--------- inst/doc/chemCal-001.eps | 1172 +++++++++--------- inst/doc/chemCal-001.pdf | 3102 +++++++++++++++++++++++----------------------- inst/doc/chemCal-002.pdf | 4 +- inst/doc/chemCal.log | 31 +- inst/doc/chemCal.pdf | Bin 133965 -> 133895 bytes inst/doc/chemCal.tex | 12 +- 8 files changed, 2783 insertions(+), 2776 deletions(-) diff --git a/inst/doc/Makefile b/inst/doc/Makefile index 26fe678..9c5cd3a 100644 --- a/inst/doc/Makefile +++ b/inst/doc/Makefile @@ -1,21 +1,33 @@ # Makefile for Sweave documents containing both Latex and R code # Author: Johannes Ranke -# Last Change: 2006 Mai 11 +# Last Change: 2006 Mai 24 # based on the Makefile of Nicholas Lewin-Koh # in turn based on work of Rouben Rostmaian -# SVN: $Id: Makefile.rnoweb 50 2006-04-18 11:13:52Z ranke $ +# SVN: $Id: Makefile.rnoweb 62 2006-05-24 08:30:59Z ranke $ RNWFILES = $(wildcard *.Rnw) TARGETS = $(patsubst %.Rnw,%.tex,$(RNWFILE)) $(patsubst %.Rnw,%.pdf,$(RNWFILES)) +RERUN = "(There were undefined references|Rerun to get (cross-references|the bars) right|Table widths have changed. Rerun LaTeX.|Linenumber reference failed)" +RERUNBIB = "No file.*\.bbl|Citation.*undefined" + %.tex: %.Rnw echo 'Sweave("$<")' | R --no-save --no-restore %.pdf: %.tex pdflatex $< + egrep -c $(RERUNBIB) $*.log && (bibtex $*;pdflatex $<); true + egrep $(RERUN) $*.log && (pdflatex $<) ; true + egrep $(RERUN) $*.log && (pdflatex $<) ; true -all: $(TARGETS) +all: all-recursive $(TARGETS) -clean: +clean: clean-recursive rm -f *.aux *.log *.bbl *.blg *.brf *.cb *.ind *.idx *.ilg \ *.inx *.ps *.dvi *.toc *.out *.lot *~ *.lof *.ttt *.fff + +all-recursive: + for dir in $(wildcard *); do if [ -d $$dir ] && [ -f $$dir/Makefile ]; then cd $$dir; $(MAKE) all; cd ..; fi; done + +clean-recursive: + for dir in $(wildcard *); do if [ -d $$dir ] && [ -f $$dir/Makefile ]; then cd $$dir; $(MAKE) clean; cd ..; fi; done diff --git a/inst/doc/Rplots.ps b/inst/doc/Rplots.ps index c5e68ec..434ef02 100644 --- a/inst/doc/Rplots.ps +++ b/inst/doc/Rplots.ps @@ -123,39 +123,39 @@ o 634.40 65.52 (40) .5 0 0 t 767.11 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-/ModDate (D:20060523165126) +/CreationDate (D:20060524104614) +/ModDate (D:20060524104614) /Title (R Graphics Output) /Producer (R 2.3.1) /Creator (R) diff --git a/inst/doc/chemCal.log b/inst/doc/chemCal.log index 26ebd4a..237b975 100644 --- a/inst/doc/chemCal.log +++ b/inst/doc/chemCal.log @@ -1,4 +1,4 @@ -This is pdfeTeX, Version 3.141592-1.21a-2.2 (Web2C 7.5.4) (format=pdflatex 2006.4.8) 23 MAY 2006 16:51 +This is pdfeTeX, Version 3.141592-1.21a-2.2 (Web2C 7.5.4) (format=pdflatex 2006.4.8) 24 MAY 2006 10:46 entering extended mode **chemCal.tex (./chemCal.tex @@ -129,7 +129,7 @@ Style option: `fancyvrb' v2.6, with DG/SPQR fixes <1998/07/17> (tvz) \FV@OutFile=\write4 No file fancyvrb.cfg. -) (/usr/share/R/share/texmf/upquote.sty +) (/usr/share/texmf-tetex/tex/latex/upquote/upquote.sty Package: upquote 2003/08/11 v1.1 Covington's upright-quote modification to verb atim and verb @@ -316,19 +316,14 @@ File: chemCal-002.pdf Graphic file (type pdf) LaTeX Font Info: Try loading font 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characters out of 1175772 + 3772 strings out of 94500 + 51588 string characters out of 1175772 97245 words of memory out of 1000000 - 6871 multiletter control sequences out of 10000+50000 - 29570 words of font info for 66 fonts, out of 500000 for 2000 + 6857 multiletter control sequences out of 10000+50000 + 29608 words of font info for 66 fonts, out of 500000 for 2000 580 hyphenation exceptions out of 8191 35i,8n,21p,255b,279s stack positions out of 1500i,500n,5000p,200000b,5000s PDF statistics: @@ -355,7 +350,7 @@ etex/fonts/type1/bluesky/cm/cmsy10.pfb> < /usr/share/texmf-tetex/fonts/type1/bluesky/cm/cmsltt10.pfb> -Output written on chemCal.pdf (4 pages, 133965 bytes). +Output written on chemCal.pdf (4 pages, 133895 bytes). diff --git a/inst/doc/chemCal.pdf b/inst/doc/chemCal.pdf index bee18f0..45a50eb 100644 Binary files a/inst/doc/chemCal.pdf and b/inst/doc/chemCal.pdf differ diff --git a/inst/doc/chemCal.tex b/inst/doc/chemCal.tex index 8887496..e26172f 100644 --- a/inst/doc/chemCal.tex +++ b/inst/doc/chemCal.tex @@ -73,13 +73,13 @@ $Prediction [1] 5.865367 $`Standard Error` -[1] 0.892611 +[1] 0.7288138 $Confidence -[1] 2.478285 +[1] 2.023511 $`Confidence Limits` -[1] 3.387082 8.343652 +[1] 3.841856 7.888878 \end{Soutput} \begin{Sinput} > inverse.predict(m, 90, ws = 0.145) @@ -89,13 +89,13 @@ $Prediction [1] 44.06025 $`Standard Error` -[1] 2.829162 +[1] 2.310001 $Confidence -[1] 7.855012 +[1] 6.41359 $`Confidence Limits` -[1] 36.20523 51.91526 +[1] 37.64666 50.47384 \end{Soutput} \end{Schunk} -- cgit v1.2.1