diff options
Diffstat (limited to 'man')
| -rw-r--r-- | man/chent.Rd | 102 | ||||
| -rw-r--r-- | man/pai.Rd | 58 | ||||
| -rw-r--r-- | man/pp.Rd | 18 |
3 files changed, 89 insertions, 89 deletions
diff --git a/man/chent.Rd b/man/chent.Rd index d94452e..15fbc54 100644 --- a/man/chent.Rd +++ b/man/chent.Rd @@ -69,28 +69,28 @@ if (!is.null(caffeine$Picture)) { \section{Methods}{ \subsection{Public methods}{ \itemize{ -\item \href{#method-new}{\code{chent$new()}} -\item \href{#method-try_pubchem}{\code{chent$try_pubchem()}} -\item \href{#method-get_pubchem}{\code{chent$get_pubchem()}} -\item \href{#method-get_rdkit}{\code{chent$get_rdkit()}} -\item \href{#method-get_chyaml}{\code{chent$get_chyaml()}} -\item \href{#method-add_p0}{\code{chent$add_p0()}} -\item \href{#method-add_cwsat}{\code{chent$add_cwsat()}} -\item \href{#method-add_PUF}{\code{chent$add_PUF()}} -\item \href{#method-add_TP}{\code{chent$add_TP()}} -\item \href{#method-add_transformation}{\code{chent$add_transformation()}} -\item \href{#method-add_soil_degradation}{\code{chent$add_soil_degradation()}} -\item \href{#method-add_soil_ff}{\code{chent$add_soil_ff()}} -\item \href{#method-add_soil_sorption}{\code{chent$add_soil_sorption()}} -\item \href{#method-pdf}{\code{chent$pdf()}} -\item \href{#method-png}{\code{chent$png()}} -\item \href{#method-emf}{\code{chent$emf()}} -\item \href{#method-clone}{\code{chent$clone()}} +\item \href{#method-chent-new}{\code{chent$new()}} +\item \href{#method-chent-try_pubchem}{\code{chent$try_pubchem()}} +\item \href{#method-chent-get_pubchem}{\code{chent$get_pubchem()}} +\item \href{#method-chent-get_rdkit}{\code{chent$get_rdkit()}} +\item \href{#method-chent-get_chyaml}{\code{chent$get_chyaml()}} +\item \href{#method-chent-add_p0}{\code{chent$add_p0()}} +\item \href{#method-chent-add_cwsat}{\code{chent$add_cwsat()}} +\item \href{#method-chent-add_PUF}{\code{chent$add_PUF()}} +\item \href{#method-chent-add_TP}{\code{chent$add_TP()}} +\item \href{#method-chent-add_transformation}{\code{chent$add_transformation()}} +\item \href{#method-chent-add_soil_degradation}{\code{chent$add_soil_degradation()}} +\item \href{#method-chent-add_soil_ff}{\code{chent$add_soil_ff()}} +\item \href{#method-chent-add_soil_sorption}{\code{chent$add_soil_sorption()}} +\item \href{#method-chent-pdf}{\code{chent$pdf()}} +\item \href{#method-chent-png}{\code{chent$png()}} +\item \href{#method-chent-emf}{\code{chent$emf()}} +\item \href{#method-chent-clone}{\code{chent$clone()}} } } \if{html}{\out{<hr>}} -\if{html}{\out{<a id="method-new"></a>}} -\if{latex}{\out{\hypertarget{method-new}{}}} +\if{html}{\out{<a id="method-chent-new"></a>}} +\if{latex}{\out{\hypertarget{method-chent-new}{}}} \subsection{Method \code{new()}}{ \subsection{Usage}{ \if{html}{\out{<div class="r">}}\preformatted{chent$new( @@ -109,8 +109,8 @@ if (!is.null(caffeine$Picture)) { } \if{html}{\out{<hr>}} -\if{html}{\out{<a id="method-try_pubchem"></a>}} -\if{latex}{\out{\hypertarget{method-try_pubchem}{}}} +\if{html}{\out{<a id="method-chent-try_pubchem"></a>}} +\if{latex}{\out{\hypertarget{method-chent-try_pubchem}{}}} \subsection{Method \code{try_pubchem()}}{ \subsection{Usage}{ \if{html}{\out{<div class="r">}}\preformatted{chent$try_pubchem(query, from = "name")}\if{html}{\out{</div>}} @@ -118,8 +118,8 @@ if (!is.null(caffeine$Picture)) { } \if{html}{\out{<hr>}} -\if{html}{\out{<a id="method-get_pubchem"></a>}} -\if{latex}{\out{\hypertarget{method-get_pubchem}{}}} +\if{html}{\out{<a id="method-chent-get_pubchem"></a>}} +\if{latex}{\out{\hypertarget{method-chent-get_pubchem}{}}} \subsection{Method \code{get_pubchem()}}{ \subsection{Usage}{ \if{html}{\out{<div class="r">}}\preformatted{chent$get_pubchem(pubchem_cid)}\if{html}{\out{</div>}} @@ -127,8 +127,8 @@ if (!is.null(caffeine$Picture)) { } \if{html}{\out{<hr>}} -\if{html}{\out{<a id="method-get_rdkit"></a>}} -\if{latex}{\out{\hypertarget{method-get_rdkit}{}}} +\if{html}{\out{<a id="method-chent-get_rdkit"></a>}} +\if{latex}{\out{\hypertarget{method-chent-get_rdkit}{}}} \subsection{Method \code{get_rdkit()}}{ \subsection{Usage}{ \if{html}{\out{<div class="r">}}\preformatted{chent$get_rdkit(template = NULL)}\if{html}{\out{</div>}} @@ -136,8 +136,8 @@ if (!is.null(caffeine$Picture)) { } \if{html}{\out{<hr>}} -\if{html}{\out{<a id="method-get_chyaml"></a>}} -\if{latex}{\out{\hypertarget{method-get_chyaml}{}}} +\if{html}{\out{<a id="method-chent-get_chyaml"></a>}} +\if{latex}{\out{\hypertarget{method-chent-get_chyaml}{}}} \subsection{Method \code{get_chyaml()}}{ \subsection{Usage}{ \if{html}{\out{<div class="r">}}\preformatted{chent$get_chyaml( @@ -148,8 +148,8 @@ if (!is.null(caffeine$Picture)) { } \if{html}{\out{<hr>}} -\if{html}{\out{<a id="method-add_p0"></a>}} -\if{latex}{\out{\hypertarget{method-add_p0}{}}} +\if{html}{\out{<a id="method-chent-add_p0"></a>}} +\if{latex}{\out{\hypertarget{method-chent-add_p0}{}}} \subsection{Method \code{add_p0()}}{ \subsection{Usage}{ \if{html}{\out{<div class="r">}}\preformatted{chent$add_p0(p0, T = NA, source = NA, page = NA, remark = "")}\if{html}{\out{</div>}} @@ -157,8 +157,8 @@ if (!is.null(caffeine$Picture)) { } \if{html}{\out{<hr>}} -\if{html}{\out{<a id="method-add_cwsat"></a>}} -\if{latex}{\out{\hypertarget{method-add_cwsat}{}}} +\if{html}{\out{<a id="method-chent-add_cwsat"></a>}} +\if{latex}{\out{\hypertarget{method-chent-add_cwsat}{}}} \subsection{Method \code{add_cwsat()}}{ \subsection{Usage}{ \if{html}{\out{<div class="r">}}\preformatted{chent$add_cwsat(cwsat, T = NA, pH = NA, source = NA, page = NA, remark = "")}\if{html}{\out{</div>}} @@ -166,8 +166,8 @@ if (!is.null(caffeine$Picture)) { } \if{html}{\out{<hr>}} -\if{html}{\out{<a id="method-add_PUF"></a>}} -\if{latex}{\out{\hypertarget{method-add_PUF}{}}} +\if{html}{\out{<a id="method-chent-add_PUF"></a>}} +\if{latex}{\out{\hypertarget{method-chent-add_PUF}{}}} \subsection{Method \code{add_PUF()}}{ \subsection{Usage}{ \if{html}{\out{<div class="r">}}\preformatted{chent$add_PUF( @@ -180,8 +180,8 @@ if (!is.null(caffeine$Picture)) { } \if{html}{\out{<hr>}} -\if{html}{\out{<a id="method-add_TP"></a>}} -\if{latex}{\out{\hypertarget{method-add_TP}{}}} +\if{html}{\out{<a id="method-chent-add_TP"></a>}} +\if{latex}{\out{\hypertarget{method-chent-add_TP}{}}} \subsection{Method \code{add_TP()}}{ \subsection{Usage}{ \if{html}{\out{<div class="r">}}\preformatted{chent$add_TP(x, smiles = NULL, pubchem = FALSE)}\if{html}{\out{</div>}} @@ -189,8 +189,8 @@ if (!is.null(caffeine$Picture)) { } \if{html}{\out{<hr>}} -\if{html}{\out{<a id="method-add_transformation"></a>}} -\if{latex}{\out{\hypertarget{method-add_transformation}{}}} +\if{html}{\out{<a id="method-chent-add_transformation"></a>}} +\if{latex}{\out{\hypertarget{method-chent-add_transformation}{}}} \subsection{Method \code{add_transformation()}}{ \subsection{Usage}{ \if{html}{\out{<div class="r">}}\preformatted{chent$add_transformation( @@ -205,8 +205,8 @@ if (!is.null(caffeine$Picture)) { } \if{html}{\out{<hr>}} -\if{html}{\out{<a id="method-add_soil_degradation"></a>}} -\if{latex}{\out{\hypertarget{method-add_soil_degradation}{}}} +\if{html}{\out{<a id="method-chent-add_soil_degradation"></a>}} +\if{latex}{\out{\hypertarget{method-chent-add_soil_degradation}{}}} \subsection{Method \code{add_soil_degradation()}}{ \subsection{Usage}{ \if{html}{\out{<div class="r">}}\preformatted{chent$add_soil_degradation( @@ -233,8 +233,8 @@ if (!is.null(caffeine$Picture)) { } \if{html}{\out{<hr>}} -\if{html}{\out{<a id="method-add_soil_ff"></a>}} -\if{latex}{\out{\hypertarget{method-add_soil_ff}{}}} +\if{html}{\out{<a id="method-chent-add_soil_ff"></a>}} +\if{latex}{\out{\hypertarget{method-chent-add_soil_ff}{}}} \subsection{Method \code{add_soil_ff()}}{ \subsection{Usage}{ \if{html}{\out{<div class="r">}}\preformatted{chent$add_soil_ff(target, soils, ff = 1, remark = "", source, page = NA)}\if{html}{\out{</div>}} @@ -242,8 +242,8 @@ if (!is.null(caffeine$Picture)) { } \if{html}{\out{<hr>}} -\if{html}{\out{<a id="method-add_soil_sorption"></a>}} -\if{latex}{\out{\hypertarget{method-add_soil_sorption}{}}} +\if{html}{\out{<a id="method-chent-add_soil_sorption"></a>}} +\if{latex}{\out{\hypertarget{method-chent-add_soil_sorption}{}}} \subsection{Method \code{add_soil_sorption()}}{ \subsection{Usage}{ \if{html}{\out{<div class="r">}}\preformatted{chent$add_soil_sorption( @@ -266,8 +266,8 @@ if (!is.null(caffeine$Picture)) { } \if{html}{\out{<hr>}} -\if{html}{\out{<a id="method-pdf"></a>}} -\if{latex}{\out{\hypertarget{method-pdf}{}}} +\if{html}{\out{<a id="method-chent-pdf"></a>}} +\if{latex}{\out{\hypertarget{method-chent-pdf}{}}} \subsection{Method \code{pdf()}}{ \subsection{Usage}{ \if{html}{\out{<div class="r">}}\preformatted{chent$pdf( @@ -279,8 +279,8 @@ if (!is.null(caffeine$Picture)) { } \if{html}{\out{<hr>}} -\if{html}{\out{<a id="method-png"></a>}} -\if{latex}{\out{\hypertarget{method-png}{}}} +\if{html}{\out{<a id="method-chent-png"></a>}} +\if{latex}{\out{\hypertarget{method-chent-png}{}}} \subsection{Method \code{png()}}{ \subsection{Usage}{ \if{html}{\out{<div class="r">}}\preformatted{chent$png( @@ -292,8 +292,8 @@ if (!is.null(caffeine$Picture)) { } \if{html}{\out{<hr>}} -\if{html}{\out{<a id="method-emf"></a>}} -\if{latex}{\out{\hypertarget{method-emf}{}}} +\if{html}{\out{<a id="method-chent-emf"></a>}} +\if{latex}{\out{\hypertarget{method-chent-emf}{}}} \subsection{Method \code{emf()}}{ \subsection{Usage}{ \if{html}{\out{<div class="r">}}\preformatted{chent$emf(file = paste0(self$identifier, ".emf"), dir = "structures/emf")}\if{html}{\out{</div>}} @@ -301,8 +301,8 @@ if (!is.null(caffeine$Picture)) { } \if{html}{\out{<hr>}} -\if{html}{\out{<a id="method-clone"></a>}} -\if{latex}{\out{\hypertarget{method-clone}{}}} +\if{html}{\out{<a id="method-chent-clone"></a>}} +\if{latex}{\out{\hypertarget{method-chent-clone}{}}} \subsection{Method \code{clone()}}{ The objects of this class are cloneable with this method. \subsection{Usage}{ @@ -41,34 +41,34 @@ if (!is.null(atr$Picture)) { \section{Methods}{ \subsection{Public methods}{ \itemize{ -\item \href{#method-new}{\code{pai$new()}} -\item \href{#method-clone}{\code{pai$clone()}} -} -} -\if{html}{ -\out{<details ><summary>Inherited methods</summary>} -\itemize{ -\item \out{<span class="pkg-link" data-pkg="chents" data-topic="chent" data-id="add_PUF">}\href{../../chents/html/chent.html#method-add_PUF}{\code{chents::chent$add_PUF()}}\out{</span>} -\item \out{<span class="pkg-link" data-pkg="chents" data-topic="chent" data-id="add_TP">}\href{../../chents/html/chent.html#method-add_TP}{\code{chents::chent$add_TP()}}\out{</span>} -\item \out{<span class="pkg-link" data-pkg="chents" data-topic="chent" data-id="add_cwsat">}\href{../../chents/html/chent.html#method-add_cwsat}{\code{chents::chent$add_cwsat()}}\out{</span>} -\item \out{<span class="pkg-link" data-pkg="chents" data-topic="chent" data-id="add_p0">}\href{../../chents/html/chent.html#method-add_p0}{\code{chents::chent$add_p0()}}\out{</span>} -\item \out{<span class="pkg-link" data-pkg="chents" data-topic="chent" data-id="add_soil_degradation">}\href{../../chents/html/chent.html#method-add_soil_degradation}{\code{chents::chent$add_soil_degradation()}}\out{</span>} -\item \out{<span class="pkg-link" data-pkg="chents" data-topic="chent" data-id="add_soil_ff">}\href{../../chents/html/chent.html#method-add_soil_ff}{\code{chents::chent$add_soil_ff()}}\out{</span>} -\item \out{<span class="pkg-link" data-pkg="chents" data-topic="chent" data-id="add_soil_sorption">}\href{../../chents/html/chent.html#method-add_soil_sorption}{\code{chents::chent$add_soil_sorption()}}\out{</span>} -\item \out{<span class="pkg-link" data-pkg="chents" data-topic="chent" data-id="add_transformation">}\href{../../chents/html/chent.html#method-add_transformation}{\code{chents::chent$add_transformation()}}\out{</span>} -\item \out{<span class="pkg-link" data-pkg="chents" data-topic="chent" data-id="emf">}\href{../../chents/html/chent.html#method-emf}{\code{chents::chent$emf()}}\out{</span>} -\item \out{<span class="pkg-link" data-pkg="chents" data-topic="chent" data-id="get_chyaml">}\href{../../chents/html/chent.html#method-get_chyaml}{\code{chents::chent$get_chyaml()}}\out{</span>} -\item \out{<span class="pkg-link" data-pkg="chents" data-topic="chent" data-id="get_pubchem">}\href{../../chents/html/chent.html#method-get_pubchem}{\code{chents::chent$get_pubchem()}}\out{</span>} -\item \out{<span class="pkg-link" data-pkg="chents" data-topic="chent" data-id="get_rdkit">}\href{../../chents/html/chent.html#method-get_rdkit}{\code{chents::chent$get_rdkit()}}\out{</span>} -\item \out{<span class="pkg-link" data-pkg="chents" data-topic="chent" data-id="pdf">}\href{../../chents/html/chent.html#method-pdf}{\code{chents::chent$pdf()}}\out{</span>} -\item \out{<span class="pkg-link" data-pkg="chents" data-topic="chent" data-id="png">}\href{../../chents/html/chent.html#method-png}{\code{chents::chent$png()}}\out{</span>} -\item \out{<span class="pkg-link" data-pkg="chents" data-topic="chent" data-id="try_pubchem">}\href{../../chents/html/chent.html#method-try_pubchem}{\code{chents::chent$try_pubchem()}}\out{</span>} -} -\out{</details>} -} +\item \href{#method-pai-new}{\code{pai$new()}} +\item \href{#method-pai-clone}{\code{pai$clone()}} +} +} +\if{html}{\out{ +<details><summary>Inherited methods</summary> +<ul> +<li><span class="pkg-link" data-pkg="chents" data-topic="chent" data-id="add_PUF"><a href='../../chents/html/chent.html#method-chent-add_PUF'><code>chents::chent$add_PUF()</code></a></span></li> +<li><span class="pkg-link" data-pkg="chents" data-topic="chent" data-id="add_TP"><a href='../../chents/html/chent.html#method-chent-add_TP'><code>chents::chent$add_TP()</code></a></span></li> +<li><span class="pkg-link" data-pkg="chents" data-topic="chent" data-id="add_cwsat"><a href='../../chents/html/chent.html#method-chent-add_cwsat'><code>chents::chent$add_cwsat()</code></a></span></li> +<li><span class="pkg-link" data-pkg="chents" data-topic="chent" data-id="add_p0"><a href='../../chents/html/chent.html#method-chent-add_p0'><code>chents::chent$add_p0()</code></a></span></li> +<li><span class="pkg-link" data-pkg="chents" data-topic="chent" data-id="add_soil_degradation"><a href='../../chents/html/chent.html#method-chent-add_soil_degradation'><code>chents::chent$add_soil_degradation()</code></a></span></li> +<li><span class="pkg-link" data-pkg="chents" data-topic="chent" data-id="add_soil_ff"><a href='../../chents/html/chent.html#method-chent-add_soil_ff'><code>chents::chent$add_soil_ff()</code></a></span></li> +<li><span class="pkg-link" data-pkg="chents" data-topic="chent" data-id="add_soil_sorption"><a href='../../chents/html/chent.html#method-chent-add_soil_sorption'><code>chents::chent$add_soil_sorption()</code></a></span></li> +<li><span class="pkg-link" data-pkg="chents" data-topic="chent" data-id="add_transformation"><a href='../../chents/html/chent.html#method-chent-add_transformation'><code>chents::chent$add_transformation()</code></a></span></li> +<li><span class="pkg-link" data-pkg="chents" data-topic="chent" data-id="emf"><a href='../../chents/html/chent.html#method-chent-emf'><code>chents::chent$emf()</code></a></span></li> +<li><span class="pkg-link" data-pkg="chents" data-topic="chent" data-id="get_chyaml"><a href='../../chents/html/chent.html#method-chent-get_chyaml'><code>chents::chent$get_chyaml()</code></a></span></li> +<li><span class="pkg-link" data-pkg="chents" data-topic="chent" data-id="get_pubchem"><a href='../../chents/html/chent.html#method-chent-get_pubchem'><code>chents::chent$get_pubchem()</code></a></span></li> +<li><span class="pkg-link" data-pkg="chents" data-topic="chent" data-id="get_rdkit"><a href='../../chents/html/chent.html#method-chent-get_rdkit'><code>chents::chent$get_rdkit()</code></a></span></li> +<li><span class="pkg-link" data-pkg="chents" data-topic="chent" data-id="pdf"><a href='../../chents/html/chent.html#method-chent-pdf'><code>chents::chent$pdf()</code></a></span></li> +<li><span class="pkg-link" data-pkg="chents" data-topic="chent" data-id="png"><a href='../../chents/html/chent.html#method-chent-png'><code>chents::chent$png()</code></a></span></li> +<li><span class="pkg-link" data-pkg="chents" data-topic="chent" data-id="try_pubchem"><a href='../../chents/html/chent.html#method-chent-try_pubchem'><code>chents::chent$try_pubchem()</code></a></span></li> +</ul> +</details> +}} \if{html}{\out{<hr>}} -\if{html}{\out{<a id="method-new"></a>}} -\if{latex}{\out{\hypertarget{method-new}{}}} +\if{html}{\out{<a id="method-pai-new"></a>}} +\if{latex}{\out{\hypertarget{method-pai-new}{}}} \subsection{Method \code{new()}}{ \subsection{Usage}{ \if{html}{\out{<div class="r">}}\preformatted{pai$new( @@ -89,8 +89,8 @@ if (!is.null(atr$Picture)) { } \if{html}{\out{<hr>}} -\if{html}{\out{<a id="method-clone"></a>}} -\if{latex}{\out{\hypertarget{method-clone}{}}} +\if{html}{\out{<a id="method-pai-clone"></a>}} +\if{latex}{\out{\hypertarget{method-pai-clone}{}}} \subsection{Method \code{clone()}}{ The objects of this class are cloneable with this method. \subsection{Usage}{ @@ -27,14 +27,14 @@ An R6 class for holding information about a product with at least one active ing \section{Methods}{ \subsection{Public methods}{ \itemize{ -\item \href{#method-new}{\code{pp$new()}} -\item \href{#method-print}{\code{pp$print()}} -\item \href{#method-clone}{\code{pp$clone()}} +\item \href{#method-pp-new}{\code{pp$new()}} +\item \href{#method-pp-print}{\code{pp$print()}} +\item \href{#method-pp-clone}{\code{pp$clone()}} } } \if{html}{\out{<hr>}} -\if{html}{\out{<a id="method-new"></a>}} -\if{latex}{\out{\hypertarget{method-new}{}}} +\if{html}{\out{<a id="method-pp-new"></a>}} +\if{latex}{\out{\hypertarget{method-pp-new}{}}} \subsection{Method \code{new()}}{ \subsection{Usage}{ \if{html}{\out{<div class="r">}}\preformatted{pp$new( @@ -49,8 +49,8 @@ An R6 class for holding information about a product with at least one active ing } \if{html}{\out{<hr>}} -\if{html}{\out{<a id="method-print"></a>}} -\if{latex}{\out{\hypertarget{method-print}{}}} +\if{html}{\out{<a id="method-pp-print"></a>}} +\if{latex}{\out{\hypertarget{method-pp-print}{}}} \subsection{Method \code{print()}}{ \subsection{Usage}{ \if{html}{\out{<div class="r">}}\preformatted{pp$print()}\if{html}{\out{</div>}} @@ -58,8 +58,8 @@ An R6 class for holding information about a product with at least one active ing } \if{html}{\out{<hr>}} -\if{html}{\out{<a id="method-clone"></a>}} -\if{latex}{\out{\hypertarget{method-clone}{}}} +\if{html}{\out{<a id="method-pp-clone"></a>}} +\if{latex}{\out{\hypertarget{method-pp-clone}{}}} \subsection{Method \code{clone()}}{ The objects of this class are cloneable with this method. \subsection{Usage}{ |