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This may break some code using the old smiles names "PubChem_Canonical"
and "PubChem_Isomeric" instead of the new smiles names "PubChem"
(including isotopic and stereochemical information) and
"PubChem_Connectivity" (only containing connectivity, but still
canonical).
Further changes in this commit:
- A fix to the test target in the makefile
- Use markdown syntax for link to objects from other packages in the
documentation
- Adapt the tests
- Increase test coverage a bit
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Otherwise, the descriptions of the methods get mixed up
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The Makefile was adjusted to the way used in other packages
of mine. Note that, @inheritParams does not work for
superclasses yet, see https://github.com/r-lib/roxygen2/issues/996,
so some function parameters are documented twice.
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