From fe9c6bf06cb89ced0f61015bb24a88990a2c8fe8 Mon Sep 17 00:00:00 2001
From: Johannes Ranke <jranke@uni-bremen.de>
Date: Thu, 21 Feb 2019 16:00:30 +0100
Subject: Use codecov and update docs

---
 .travis.yml     | 4 ++++
 DESCRIPTION     | 3 ++-
 README.html     | 2 +-
 README.md       | 1 +
 docs/index.html | 1 +
 5 files changed, 9 insertions(+), 2 deletions(-)

diff --git a/.travis.yml b/.travis.yml
index 862f118..712829e 100644
--- a/.travis.yml
+++ b/.travis.yml
@@ -3,3 +3,7 @@ cache: packages
 r:
   - release
   - devel
+github_packages:
+  - r-lib/covr
+after_success:
+  - Rscript -e 'covr::codecov()'
diff --git a/DESCRIPTION b/DESCRIPTION
index 451e6c5..a46a427 100644
--- a/DESCRIPTION
+++ b/DESCRIPTION
@@ -2,7 +2,7 @@ Package: chents
 Type: Package
 Title: Chemical Entities as R Objects
 Version: 0.2-7
-Date: 2019-02-19
+Date: 2019-02-21
 Authors@R: c(person("Johannes", "Ranke", role = c("aut", "cre", "cph"),
                     email = "jranke@uni-bremen.de"))
 Description: Utilities for dealing with chemical entities and associated
@@ -21,6 +21,7 @@ Suggests:
     knitr,
     testthat,
     PythonInR,
+    covr
 License: GPL
 LazyLoad: yes
 LazyData: yes
diff --git a/README.html b/README.html
index f113586..8d63b58 100644
--- a/README.html
+++ b/README.html
@@ -374,7 +374,7 @@ $(document).ready(function () {
 
 <div id="chents" class="section level1">
 <h1>chents</h1>
-<p><a href="https://travis-ci.com/jranke/chents"><img src="data:image/svg+xml;base64,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" alt="Build Status" /></a></p>
+<p><a href="https://travis-ci.com/jranke/chents"><img src="data:image/svg+xml;base64,PHN2ZyB4bWxucz0iaHR0cDovL3d3dy53My5vcmcvMjAwMC9zdmciIHdpZHRoPSI5MCIgaGVpZ2h0PSIyMCI+PGxpbmVhckdyYWRpZW50IGlkPSJhIiB4Mj0iMCIgeTI9IjEwMCUiPjxzdG9wIG9mZnNldD0iMCIgc3RvcC1jb2xvcj0iI2JiYiIgc3RvcC1vcGFjaXR5PSIuMSIvPjxzdG9wIG9mZnNldD0iMSIgc3RvcC1vcGFjaXR5PSIuMSIvPjwvbGluZWFyR3JhZGllbnQ+PHJlY3Qgcng9IjMiIHdpZHRoPSI5MCIgaGVpZ2h0PSIyMCIgZmlsbD0iIzU1NSIvPjxyZWN0IHJ4PSIzIiB4PSIzNyIgd2lkdGg9IjUzIiBoZWlnaHQ9IjIwIiBmaWxsPSIjNGMxIi8+PHBhdGggZmlsbD0iIzRjMSIgZD0iTTM3IDBoNHYyMGgtNHoiLz48cmVjdCByeD0iMyIgd2lkdGg9IjkwIiBoZWlnaHQ9IjIwIiBmaWxsPSJ1cmwoI2EpIi8+PGcgZmlsbD0iI2ZmZiIgdGV4dC1hbmNob3I9Im1pZGRsZSIgZm9udC1mYW1pbHk9IkRlamFWdSBTYW5zLFZlcmRhbmEsR2VuZXZhLHNhbnMtc2VyaWYiIGZvbnQtc2l6ZT0iMTEiPjx0ZXh0IHg9IjE5LjUiIHk9IjE1IiBmaWxsPSIjMDEwMTAxIiBmaWxsLW9wYWNpdHk9Ii4zIj5idWlsZDwvdGV4dD48dGV4dCB4PSIxOS41IiB5PSIxNCI+YnVpbGQ8L3RleHQ+PHRleHQgeD0iNjIuNSIgeT0iMTUiIGZpbGw9IiMwMTAxMDEiIGZpbGwtb3BhY2l0eT0iLjMiPnBhc3Npbmc8L3RleHQ+PHRleHQgeD0iNjIuNSIgeT0iMTQiPnBhc3Npbmc8L3RleHQ+PC9nPjwvc3ZnPg==" alt="Build Status" /></a> <a href="https://codecov.io/github/jranke/chents"><img src="data:image/svg+xml;base64,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" alt="codecov" /></a></p>
 <p>The R package <strong>chents</strong> provides some utilities for working with chemical entities in R.</p>
 <div id="features" class="section level2">
 <h2>Features</h2>
diff --git a/README.md b/README.md
index ffa9844..84b49ef 100644
--- a/README.md
+++ b/README.md
@@ -1,6 +1,7 @@
 # chents
 
 [![Build Status](https://travis-ci.com/jranke/chents.svg?branch=master)](https://travis-ci.com/jranke/chents)
+[![codecov](https://codecov.io/github/jranke/chents/branch/master/graphs/badge.svg)](https://codecov.io/github/jranke/chents) 
 
 The R package **chents** provides some utilities for working with chemical 
 entities in R.
diff --git a/docs/index.html b/docs/index.html
index 6d69e3f..c9bd988 100644
--- a/docs/index.html
+++ b/docs/index.html
@@ -116,6 +116,7 @@
 <h2>Dev status</h2>
 <ul class="list-unstyled">
 <li><a href="https://travis-ci.com/jranke/chents"><img src="https://travis-ci.com/jranke/chents.svg?branch=master" alt="Build Status"></a></li>
+<li><a href="https://codecov.io/github/jranke/chents"><img src="https://codecov.io/github/jranke/chents/branch/master/graphs/badge.svg" alt="codecov"></a></li>
 </ul>
 </div>
 </div>
-- 
cgit v1.2.1