From aa80ce4f46f9ff1a2851ba9ba873a55a8f6ebc6d Mon Sep 17 00:00:00 2001
From: Johannes Ranke <jranke@uni-bremen.de>
Date: Tue, 19 Feb 2019 17:17:48 +0100
Subject: Change package URL to github to get source code links

---
 docs/reference/index.html | 180 +++++++++++++++++++++++++---------------------
 1 file changed, 98 insertions(+), 82 deletions(-)

(limited to 'docs/reference/index.html')
diff --git a/docs/reference/index.html b/docs/reference/index.html
index 29771c9..e05a1c4 100644
--- a/docs/reference/index.html
+++ b/docs/reference/index.html
@@ -1,6 +1,6 @@
 <!-- Generated by pkgdown: do not edit by hand -->
 <!DOCTYPE html>
-<html>
+<html lang="en">
   <head>
   <meta charset="utf-8">
 <meta http-equiv="X-UA-Compatible" content="IE=edge">
@@ -9,27 +9,34 @@
 <title>Function reference • chents</title>
 
 <!-- jquery -->
-<script src="https://code.jquery.com/jquery-3.1.0.min.js" integrity="sha384-nrOSfDHtoPMzJHjVTdCopGqIqeYETSXhZDFyniQ8ZHcVy08QesyHcnOUpMpqnmWq" crossorigin="anonymous"></script>
+<script src="https://cdnjs.cloudflare.com/ajax/libs/jquery/3.3.1/jquery.min.js" integrity="sha256-FgpCb/KJQlLNfOu91ta32o/NMZxltwRo8QtmkMRdAu8=" crossorigin="anonymous"></script>
 <!-- Bootstrap -->
 
-<link href="https://maxcdn.bootstrapcdn.com/bootstrap/3.3.7/css/bootstrap.min.css" rel="stylesheet" integrity="sha384-BVYiiSIFeK1dGmJRAkycuHAHRg32OmUcww7on3RYdg4Va+PmSTsz/K68vbdEjh4u" crossorigin="anonymous">
-<script src="https://maxcdn.bootstrapcdn.com/bootstrap/3.3.7/js/bootstrap.min.js" integrity="sha384-Tc5IQib027qvyjSMfHjOMaLkfuWVxZxUPnCJA7l2mCWNIpG9mGCD8wGNIcPD7Txa" crossorigin="anonymous"></script>
+<link rel="stylesheet" href="https://cdnjs.cloudflare.com/ajax/libs/twitter-bootstrap/3.3.7/css/bootstrap.min.css" integrity="sha256-916EbMg70RQy9LHiGkXzG8hSg9EdNy97GazNG/aiY1w=" crossorigin="anonymous" />
+<script src="https://cdnjs.cloudflare.com/ajax/libs/twitter-bootstrap/3.3.7/js/bootstrap.min.js" integrity="sha256-U5ZEeKfGNOja007MMD3YBI0A3OSZOQbeG6z2f2Y0hu8=" crossorigin="anonymous"></script>
 
 <!-- Font Awesome icons -->
-<link href="https://maxcdn.bootstrapcdn.com/font-awesome/4.6.3/css/font-awesome.min.css" rel="stylesheet" integrity="sha384-T8Gy5hrqNKT+hzMclPo118YTQO6cYprQmhrYwIiQ/3axmI1hQomh7Ud2hPOy8SP1" crossorigin="anonymous">
+<link rel="stylesheet" href="https://cdnjs.cloudflare.com/ajax/libs/font-awesome/4.7.0/css/font-awesome.min.css" integrity="sha256-eZrrJcwDc/3uDhsdt61sL2oOBY362qM3lon1gyExkL0=" crossorigin="anonymous" />
 
 <!-- clipboard.js -->
-<script src="https://cdnjs.cloudflare.com/ajax/libs/clipboard.js/1.7.1/clipboard.min.js" integrity="sha384-cV+rhyOuRHc9Ub/91rihWcGmMmCXDeksTtCihMupQHSsi8GIIRDG0ThDc3HGQFJ3" crossorigin="anonymous"></script>
+<script src="https://cdnjs.cloudflare.com/ajax/libs/clipboard.js/2.0.4/clipboard.min.js" integrity="sha256-FiZwavyI2V6+EXO1U+xzLG3IKldpiTFf3153ea9zikQ=" crossorigin="anonymous"></script>
+
+<!-- sticky kit -->
+<script src="https://cdnjs.cloudflare.com/ajax/libs/sticky-kit/1.1.3/sticky-kit.min.js" integrity="sha256-c4Rlo1ZozqTPE2RLuvbusY3+SU1pQaJC0TjuhygMipw=" crossorigin="anonymous"></script>
 
 <!-- pkgdown -->
 <link href="../pkgdown.css" rel="stylesheet">
-<script src="../jquery.sticky-kit.min.js"></script>
 <script src="../pkgdown.js"></script>
-  
-  
+
+
+
 <meta property="og:title" content="Function reference" />
+
+
+
 <!-- mathjax -->
-<script src='https://mathjax.rstudio.com/latest/MathJax.js?config=TeX-AMS-MML_HTMLorMML'></script>
+<script src="https://cdnjs.cloudflare.com/ajax/libs/mathjax/2.7.5/MathJax.js" integrity="sha256-nvJJv9wWKEm88qvoQl9ekL2J+k/RWIsaSScxxlsrv8k=" crossorigin="anonymous"></script>
+<script src="https://cdnjs.cloudflare.com/ajax/libs/mathjax/2.7.5/config/TeX-AMS-MML_HTMLorMML.js" integrity="sha256-84DKXVJXs0/F8OTMzX4UR909+jtl4G7SPypPavF+GfA=" crossorigin="anonymous"></script>
 
 <!--[if lt IE 9]>
 <script src="https://oss.maxcdn.com/html5shiv/3.7.3/html5shiv.min.js"></script>
@@ -45,13 +52,18 @@
       <div class="navbar navbar-default navbar-fixed-top" role="navigation">
   <div class="container">
     <div class="navbar-header">
-      <button type="button" class="navbar-toggle collapsed" data-toggle="collapse" data-target="#navbar">
+      <button type="button" class="navbar-toggle collapsed" data-toggle="collapse" data-target="#navbar" aria-expanded="false">
+        <span class="sr-only">Toggle navigation</span>
         <span class="icon-bar"></span>
         <span class="icon-bar"></span>
         <span class="icon-bar"></span>
       </button>
-      <a class="navbar-brand" href="../index.html">chents</a>
+      <span class="navbar-brand">
+        <a class="navbar-link" href="../index.html">chents</a>
+        <span class="version label label-default" data-toggle="tooltip" data-placement="bottom" title="Released version">0.2.6</span>
+      </span>
     </div>
+
     <div id="navbar" class="navbar-collapse collapse">
       <ul class="nav navbar-nav">
         <li>
@@ -66,8 +78,14 @@
       </ul>
       
       <ul class="nav navbar-nav navbar-right">
-        
+        <li>
+  <a href="https://github.com/jranke/chents">
+    <span class="fa fa-github fa-lg"></span>
+     
+  </a>
+</li>
       </ul>
+      
     </div><!--/.nav-collapse -->
   </div><!--/.container -->
 </div><!--/.navbar -->
@@ -75,76 +93,72 @@
       
       </header>
 
-      <div class="row">
-  <div class="col-md-9">
+<div class="row">
+  <div class="contents col-md-9">
     <div class="page-header">
-      <h1>
-        Reference
-        <small>version&nbsp;0.2-6</small>
-      </h1>
+      <h1>Reference</h1>
     </div>
 
-    <div class="contents">
-      <table class="ref-index">
-
-      <colgroup>
-        <col class="alias" />
-        <col class="title" />
-      </colgroup>
-
-      <tbody>
-        <tr>
-          <th colspan="2">
-            <h2 id="section-r-class-definitions-and-methods" class="hasAnchor"><a href="#section-r-class-definitions-and-methods" class="anchor"></a>R6 Class definitions and methods</h2>
-            <p class="section-desc"></p>
-          </th>
-        </tr>
-        <tr>
-          <!--  -->
-          <td>
-            <p><code><a href="chent.html">chent</a></code> </p>
-          </td>
-          <td><p>An R6 class for chemical entities with associated data</p></td>
-        </tr><tr>
-          <!--  -->
-          <td>
-            <p><code><a href="draw_svg.chent.html">draw_svg.chent</a></code> </p>
-          </td>
-          <td><p>Draw SVG graph from a chent object using RDKit</p></td>
-        </tr><tr>
-          <!--  -->
-          <td>
-            <p><code><a href="plot.chent.html">plot</a></code> </p>
-          </td>
-          <td><p>Plot method for chent objects</p></td>
-        </tr><tr>
-          <!--  -->
-          <td>
-            <p><code><a href="print.chent.html">print</a></code> </p>
-          </td>
-          <td><p>Printing method for chent objects</p></td>
-        </tr><tr>
-          <!--  -->
-          <td>
-            <p><code><a href="pai.html">pai</a></code> </p>
-          </td>
-          <td><p>An R6 class for pesticidal active ingredients and associated data</p></td>
-        </tr><tr>
-          <!--  -->
-          <td>
-            <p><code><a href="print.pai.html">print</a></code> </p>
-          </td>
-          <td><p>Printing method for pai objects (pesticidal active ingredients)</p></td>
-        </tr><tr>
-          <!--  -->
-          <td>
-            <p><code><a href="pp.html">pp</a></code> </p>
-          </td>
-          <td><p>R6 class for holding a product with at least one active ingredient</p></td>
-        </tr>
-      </tbody>
-      </table>
-    </div>
+    <table class="ref-index">
+
+    <colgroup>
+      
+      <col class="alias" />
+      <col class="title" />
+    </colgroup>
+
+    <tbody>
+      <tr>
+        <th colspan="2">
+          <h2 id="section-r-class-definitions-and-methods" class="hasAnchor"><a href="#section-r-class-definitions-and-methods" class="anchor"></a>R6 Class definitions and methods</h2>
+          <p class="section-desc"></p>
+        </th>
+      </tr>
+      <tr>
+        
+        <td>
+          <p><code><a href="chent.html">chent</a></code> </p>
+        </td>
+        <td><p>An R6 class for chemical entities with associated data</p></td>
+      </tr><tr>
+        
+        <td>
+          <p><code><a href="draw_svg.chent.html">draw_svg.chent()</a></code> </p>
+        </td>
+        <td><p>Draw SVG graph from a chent object using RDKit</p></td>
+      </tr><tr>
+        
+        <td>
+          <p><code><a href="plot.chent.html">plot(<i>&lt;chent&gt;</i>)</a></code> </p>
+        </td>
+        <td><p>Plot method for chent objects</p></td>
+      </tr><tr>
+        
+        <td>
+          <p><code><a href="print.chent.html">print(<i>&lt;chent&gt;</i>)</a></code> </p>
+        </td>
+        <td><p>Printing method for chent objects</p></td>
+      </tr><tr>
+        
+        <td>
+          <p><code><a href="pai.html">pai</a></code> </p>
+        </td>
+        <td><p>An R6 class for pesticidal active ingredients and associated data</p></td>
+      </tr><tr>
+        
+        <td>
+          <p><code><a href="print.pai.html">print(<i>&lt;pai&gt;</i>)</a></code> </p>
+        </td>
+        <td><p>Printing method for pai objects (pesticidal active ingredients)</p></td>
+      </tr><tr>
+        
+        <td>
+          <p><code><a href="pp.html">pp</a></code> </p>
+        </td>
+        <td><p>R6 class for holding a product with at least one active ingredient</p></td>
+      </tr>
+    </tbody>
+    </table>
   </div>
 
   <div class="col-md-3 hidden-xs hidden-sm" id="sidebar">
@@ -161,11 +175,13 @@
 </div>
 
 <div class="pkgdown">
-  <p>Site built with <a href="http://pkgdown.r-lib.org/">pkgdown</a>.</p>
+  <p>Site built with <a href="https://pkgdown.r-lib.org/">pkgdown</a> 1.3.0.</p>
 </div>
-
       </footer>
    </div>
 
+  
+
   </body>
 </html>
+
-- 
cgit v1.2.1


- R6 Class definitions and methods - -
- `chent` -	An R6 class for chemical entities with associated data
- `draw_svg.chent` -	Draw SVG graph from a chent object using RDKit
- `plot` -	Plot method for chent objects
- `print` -	Printing method for chent objects
- `pai` -	An R6 class for pesticidal active ingredients and associated data
- `print` -	Printing method for pai objects (pesticidal active ingredients)
- `pp` -	R6 class for holding a product with at least one active ingredient
+ R6 Class definitions and methods + +
+ `chent` +	An R6 class for chemical entities with associated data
+ `draw_svg.chent()` +	Draw SVG graph from a chent object using RDKit
+ `plot(<chent>)` +	Plot method for chent objects
+ `print(<chent>)` +	Printing method for chent objects
+ `pai` +	An R6 class for pesticidal active ingredients and associated data
+ `print(<pai>)` +	Printing method for pai objects (pesticidal active ingredients)
+ `pp` +	R6 class for holding a product with at least one active ingredient