# Check if we can use RDKit skip_if_no_rdkit <- function() { if (!chents:::rdkit_available) skip("RDKit is not available via reticulate") } test_that("We can initialise an object and add information", { oct <- chent$new("1-octanol", smiles = "CCCCCCCCO", rdkit = FALSE, pubchem = FALSE, chyaml = FALSE) expect_equal(oct$identifier, c(X1.octanol = "1-octanol")) # The name of the identifier is generated using make.names() expect_equal(oct$inchikey, structure(NA, source = "user")) expect_equal(oct$smiles, c(user = "CCCCCCCCO")) oct$try_pubchem() |> expect_message("Querying PubChem for name 1-octanol") |> expect_warning("Overwriting uninitialized InChIKey") expect_equal(oct$inchikey, structure("KBPLFHHGFOOTCA-UHFFFAOYSA-N", source = "pubchem")) expect_equal(oct$smiles[["PubChem"]], "CCCCCCCCO") skip_if_no_rdkit() oct$get_rdkit() |> expect_message("Get chemical information from RDKit using user SMILES") expect_equal(round(oct$mw, 2), structure(130.23, source = "pubchem")) expect_snapshot(print(oct)) })