Static documentation rebuilt by pkgdown::build_site()

author: Johannes Ranke <jranke@uni-bremen.de> 2018-06-06 02:11:57 +0200
committer: Johannes Ranke <jranke@uni-bremen.de> 2018-06-06 02:11:57 +0200
commit: 23528ad9b4f07434b3249f1e48ade1e0d07528bf (patch)
tree: c9814c4b8bdbdda823e0d38012bb08bbc324ea9e
parent: 16aadfc099f31741a127cf52f18253d44d88a86a (diff)
27 files changed, 893 insertions, 338 deletions
diff --git a/DESCRIPTION b/DESCRIPTION
index 238ed71..4153556 100644
--- a/DESCRIPTION
+++ b/DESCRIPTION
@@ -24,3 +24,4 @@ LazyLoad: yes
 LazyData: yes
 URL: https://pkgdown.jrwb.de/drfit
 NeedsCompilation: no
+RoxygenNote: 6.0.1
diff --git a/docs/authors.html b/docs/authors.html
index 3734d36..514359f 100644
--- a/docs/authors.html
+++ b/docs/authors.html
@@ -21,13 +21,19 @@
 <!-- clipboard.js -->
 <script src="https://cdnjs.cloudflare.com/ajax/libs/clipboard.js/1.7.1/clipboard.min.js" integrity="sha384-cV+rhyOuRHc9Ub/91rihWcGmMmCXDeksTtCihMupQHSsi8GIIRDG0ThDc3HGQFJ3" crossorigin="anonymous"></script>
 
+<!-- sticky kit -->
+<script src="https://cdnjs.cloudflare.com/ajax/libs/sticky-kit/1.1.3/sticky-kit.min.js" integrity="sha256-c4Rlo1ZozqTPE2RLuvbusY3+SU1pQaJC0TjuhygMipw=" crossorigin="anonymous"></script>
+
 <!-- pkgdown -->
 <link href="pkgdown.css" rel="stylesheet">
-<script src="jquery.sticky-kit.min.js"></script>
 <script src="pkgdown.js"></script>
-  
-  
+
+
+
 <meta property="og:title" content="Authors" />
+
+
+
 <!-- mathjax -->
 <script src='https://mathjax.rstudio.com/latest/MathJax.js?config=TeX-AMS-MML_HTMLorMML'></script>
 
@@ -50,8 +56,12 @@
         <span class="icon-bar"></span>
         <span class="icon-bar"></span>
       </button>
-      <a class="navbar-brand" href="index.html">drfit</a>
+      <span class="navbar-brand">
+        <a class="navbar-link" href="index.html">drfit</a>
+        <span class="label label-default" data-toggle="tooltip" data-placement="bottom" title="Released package">0.7.1</span>
+      </span>
     </div>
+
     <div id="navbar" class="navbar-collapse collapse">
       <ul class="nav navbar-nav">
         <li>
@@ -68,6 +78,7 @@
       <ul class="nav navbar-nav navbar-right">
         
       </ul>
+      
     </div><!--/.nav-collapse -->
   </div><!--/.container -->
 </div><!--/.navbar -->
@@ -75,15 +86,15 @@
       
       </header>
 
-      <div class="row">
-  <div class="contents col-md-12">
+<div class="row">
+  <div class="contents col-md-9">
     <div class="page-header">
       <h1>Authors</h1>
     </div>
 
     <ul class="list-unstyled">
       <li>
-        <p><strong>Johannes Ranke</strong>. Author, maintainer. <a href='https://orcid.org/0000-0003-4371-6538' target='orcid.widget'><img src='https://members.orcid.org/sites/default/files/vector_iD_icon.svg' class='orcid'></a>
+        <p><strong>Johannes Ranke</strong>. Author, maintainer. <a href='https://orcid.org/0000-0003-4371-6538' target='orcid.widget'><img src='https://members.orcid.org/sites/default/files/vector_iD_icon.svg' class='orcid' height='16'></a>
         </p>
       </li>
     </ul>
@@ -105,5 +116,8 @@
       </footer>
    </div>
 
+  
+
   </body>
 </html>
+
diff --git a/docs/docsearch.css b/docs/docsearch.css
new file mode 100644
index 0000000..e5f1fe1
--- /dev/null
+++ b/docs/docsearch.css
@@ -0,0 +1,148 @@
+/* Docsearch -------------------------------------------------------------- */
+/*
+  Source: https://github.com/algolia/docsearch/
+  License: MIT
+*/
+
+.algolia-autocomplete {
+  display: block;
+  -webkit-box-flex: 1;
+  -ms-flex: 1;
+  flex: 1
+}
+
+.algolia-autocomplete .ds-dropdown-menu {
+  width: 100%;
+  min-width: none;
+  max-width: none;
+  padding: .75rem 0;
+  background-color: #fff;
+  background-clip: padding-box;
+  border: 1px solid rgba(0, 0, 0, .1);
+  box-shadow: 0 .5rem 1rem rgba(0, 0, 0, .175);
+}
+
+@media (min-width:768px) {
+  .algolia-autocomplete .ds-dropdown-menu {
+      width: 175%
+  }
+}
+
+.algolia-autocomplete .ds-dropdown-menu::before {
+  display: none
+}
+
+.algolia-autocomplete .ds-dropdown-menu [class^=ds-dataset-] {
+  padding: 0;
+  background-color: rgb(255,255,255);
+  border: 0;
+  max-height: 80vh;
+}
+
+.algolia-autocomplete .ds-dropdown-menu .ds-suggestions {
+  margin-top: 0
+}
+
+.algolia-autocomplete .algolia-docsearch-suggestion {
+  padding: 0;
+  overflow: visible
+}
+
+.algolia-autocomplete .algolia-docsearch-suggestion--category-header {
+  padding: .125rem 1rem;
+  margin-top: 0;
+  font-size: 1.3em;
+  font-weight: 500;
+  color: #00008B;
+  border-bottom: 0
+}
+
+.algolia-autocomplete .algolia-docsearch-suggestion--wrapper {
+    float: none;
+    padding-top: 0
+}
+
+.algolia-autocomplete .algolia-docsearch-suggestion--subcategory-column {
+  float: none;
+  width: auto;
+  padding: 0;
+  text-align: left
+}
+
+.algolia-autocomplete .algolia-docsearch-suggestion--content {
+  float: none;
+  width: auto;
+  padding: 0
+}
+
+.algolia-autocomplete .algolia-docsearch-suggestion--content::before {
+  display: none
+}
+
+.algolia-autocomplete .ds-suggestion:not(:first-child) .algolia-docsearch-suggestion--category-header {
+  padding-top: .75rem;
+  margin-top: .75rem;
+  border-top: 1px solid rgba(0, 0, 0, .1)
+}
+
+.algolia-autocomplete .ds-suggestion .algolia-docsearch-suggestion--subcategory-column {
+  display: block;
+  padding: .1rem 1rem;
+  margin-bottom: 0.1;
+  font-size: 1.0em;
+  font-weight: 400
+  /* display: none */
+}
+
+.algolia-autocomplete .algolia-docsearch-suggestion--title {
+  display: block;
+  padding: .25rem 1rem;
+  margin-bottom: 0;
+  font-size: 0.9em;
+  font-weight: 400
+}
+
+.algolia-autocomplete .algolia-docsearch-suggestion--text {
+  padding: 0 1rem .5rem;
+  margin-top: -.25rem;
+  font-size: 0.8em;
+  font-weight: 400;
+  line-height: 1.25
+}
+
+.algolia-autocomplete .algolia-docsearch-footer {
+  width: 110px;
+  height: 20px;
+  z-index: 3;
+  margin-top: 10.66667px;
+  float: right;
+  font-size: 0;
+  line-height: 0;
+}
+
+.algolia-autocomplete .algolia-docsearch-footer--logo {
+  background-image: url("data:image/svg+xml;utf8,<svg viewBox='0 0 130 18' xmlns='http://www.w3.org/2000/svg'><defs><linearGradient x1='-36.868%' y1='134.936%' x2='129.432%' y2='-27.7%' id='a'><stop stop-color='%2300AEFF' offset='0%'/><stop stop-color='%233369E7' offset='100%'/></linearGradient></defs><g fill='none' fill-rule='evenodd'><path d='M59.399.022h13.299a2.372 2.372 0 0 1 2.377 2.364V15.62a2.372 2.372 0 0 1-2.377 2.364H59.399a2.372 2.372 0 0 1-2.377-2.364V2.381A2.368 2.368 0 0 1 59.399.022z' fill='url(%23a)'/><path d='M66.257 4.56c-2.815 0-5.1 2.272-5.1 5.078 0 2.806 2.284 5.072 5.1 5.072 2.815 0 5.1-2.272 5.1-5.078 0-2.806-2.279-5.072-5.1-5.072zm0 8.652c-1.983 0-3.593-1.602-3.593-3.574 0-1.972 1.61-3.574 3.593-3.574 1.983 0 3.593 1.602 3.593 3.574a3.582 3.582 0 0 1-3.593 3.574zm0-6.418v2.664c0 .076.082.131.153.093l2.377-1.226c.055-.027.071-.093.044-.147a2.96 2.96 0 0 0-2.465-1.487c-.055 0-.11.044-.11.104l.001-.001zm-3.33-1.956l-.312-.311a.783.783 0 0 0-1.106 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+  background-repeat: no-repeat;
+  background-position: 50%;
+  background-size: 100%;
+  overflow: hidden;
+  text-indent: -9000px;
+  width: 100%;
+  height: 100%;
+  display: block;
+  transform: translate(-8px);
+}
+
+.algolia-autocomplete .algolia-docsearch-suggestion--highlight {
+  color: #FF8C00;
+  background: rgba(232, 189, 54, 0.1)
+}
+
+
+.algolia-autocomplete .algolia-docsearch-suggestion--text .algolia-docsearch-suggestion--highlight {
+  box-shadow: inset 0 -2px 0 0 rgba(105, 105, 105, .5)
+}
+
+.algolia-autocomplete .ds-suggestion.ds-cursor .algolia-docsearch-suggestion--content {
+  background-color: rgba(192, 192, 192, .15)
+}
diff --git a/docs/docsearch.js b/docs/docsearch.js
new file mode 100644
index 0000000..b35504c
--- /dev/null
+++ b/docs/docsearch.js
@@ -0,0 +1,85 @@
+$(function() {
+
+  // register a handler to move the focus to the search bar
+  // upon pressing shift + "/" (i.e. "?")
+  $(document).on('keydown', function(e) {
+    if (e.shiftKey && e.keyCode == 191) {
+      e.preventDefault();
+      $("#search-input").focus();
+    }
+  });
+
+  $(document).ready(function() {
+    // do keyword highlighting
+    /* modified from https://jsfiddle.net/julmot/bL6bb5oo/ */
+    var mark = function() {
+
+      var referrer = document.URL ;
+      var paramKey = "q" ;
+
+      if (referrer.indexOf("?") !== -1) {
+        var qs = referrer.substr(referrer.indexOf('?') + 1);
+        var qs_noanchor = qs.split('#')[0];
+        var qsa = qs_noanchor.split('&');
+        var keyword = "";
+
+        for (var i = 0; i < qsa.length; i++) {
+          var currentParam = qsa[i].split('=');
+
+          if (currentParam.length !== 2) {
+            continue;
+          }
+
+          if (currentParam[0] == paramKey) {
+            keyword = decodeURIComponent(currentParam[1].replace(/\+/g, "%20"));
+          }
+        }
+
+        if (keyword !== "") {
+          $(".contents").unmark({
+            done: function() {
+              $(".contents").mark(keyword);
+            }
+          });
+        }
+      }
+    };
+
+    mark();
+  });
+});
+
+/* Search term highlighting ------------------------------*/
+
+function matchedWords(hit) {
+  var words = [];
+
+  var hierarchy = hit._highlightResult.hierarchy;
+  // loop to fetch from lvl0, lvl1, etc.
+  for (var idx in hierarchy) {
+    words = words.concat(hierarchy[idx].matchedWords);
+  }
+
+  var content = hit._highlightResult.content;
+  if (content) {
+    words = words.concat(content.matchedWords);
+  }
+
+  // return unique words
+  var words_uniq = [...new Set(words)];
+  return words_uniq;
+}
+
+function updateHitURL(hit) {
+
+  var words = matchedWords(hit);
+  var url = "";
+
+  if (hit.anchor) {
+    url = hit.url_without_anchor + '?q=' + escape(words.join(" ")) + '#' + hit.anchor;
+  } else {
+    url = hit.url + '?q=' + escape(words.join(" "));
+  }
+
+  return url;
+}
diff --git a/docs/index.html b/docs/index.html
index d13a554..98afd7d 100644
--- a/docs/index.html
+++ b/docs/index.html
@@ -8,8 +8,8 @@
 <title>Dose-Response Data Evaluation • drfit</title>
 <!-- jquery --><script src="https://code.jquery.com/jquery-3.1.0.min.js" integrity="sha384-nrOSfDHtoPMzJHjVTdCopGqIqeYETSXhZDFyniQ8ZHcVy08QesyHcnOUpMpqnmWq" crossorigin="anonymous"></script><!-- Bootstrap --><link href="https://maxcdn.bootstrapcdn.com/bootstrap/3.3.7/css/bootstrap.min.css" rel="stylesheet" integrity="sha384-BVYiiSIFeK1dGmJRAkycuHAHRg32OmUcww7on3RYdg4Va+PmSTsz/K68vbdEjh4u" crossorigin="anonymous">
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-<!-- clipboard.js --><script src="https://cdnjs.cloudflare.com/ajax/libs/clipboard.js/1.7.1/clipboard.min.js" integrity="sha384-cV+rhyOuRHc9Ub/91rihWcGmMmCXDeksTtCihMupQHSsi8GIIRDG0ThDc3HGQFJ3" crossorigin="anonymous"></script><!-- pkgdown --><link href="pkgdown.css" rel="stylesheet">
-<script src="jquery.sticky-kit.min.js"></script><script src="pkgdown.js"></script><meta property="og:title" content="Dose-Response Data Evaluation">
+<!-- clipboard.js --><script src="https://cdnjs.cloudflare.com/ajax/libs/clipboard.js/1.7.1/clipboard.min.js" integrity="sha384-cV+rhyOuRHc9Ub/91rihWcGmMmCXDeksTtCihMupQHSsi8GIIRDG0ThDc3HGQFJ3" crossorigin="anonymous"></script><!-- sticky kit --><script src="https://cdnjs.cloudflare.com/ajax/libs/sticky-kit/1.1.3/sticky-kit.min.js" integrity="sha256-c4Rlo1ZozqTPE2RLuvbusY3+SU1pQaJC0TjuhygMipw=" crossorigin="anonymous"></script><!-- pkgdown --><link href="pkgdown.css" rel="stylesheet">
+<script src="pkgdown.js"></script><meta property="og:title" content="Dose-Response Data Evaluation">
 <meta property="og:description" content="A somewhat outdated package of basic and easy-to-use functions for
   fitting dose-response curves to continuous dose-response data, calculating some
   toxicological parameters and plotting the results. Please consider using
@@ -38,8 +38,12 @@
         <span class="icon-bar"></span>
         <span class="icon-bar"></span>
       </button>
-      <a class="navbar-brand" href="index.html">drfit</a>
+      <span class="navbar-brand">
+        <a class="navbar-link" href="index.html">drfit</a>
+        <span class="label label-default" data-toggle="tooltip" data-placement="bottom" title="Released package">0.7.1</span>
+      </span>
     </div>
+
     <div id="navbar" class="navbar-collapse collapse">
       <ul class="nav navbar-nav">
 <li>
@@ -72,23 +76,36 @@
   </div>
 
   <div class="col-md-3" id="sidebar">
-    <h2>Links</h2>
+    <div class="links">
+<h2>Links</h2>
 <ul class="list-unstyled">
-<li>Download from CRAN at <br><a href="https://cran.r-project.org/package=drfit">https://cran.r-project.org/package=drfit</a>
+<li>Download from CRAN at <br><a href="https://cloud.r-project.org/package=drfit">https://cloud.r-project.org/package=drfit</a>
+</li>
+<li>Report a bug at <br><a href="NA">NA</a>
 </li>
 </ul>
+</div>
+<div class="license">
 <h2>License</h2>
-<p>GPL (&gt;= 2)</p>
+<ul class="list-unstyled">
+<li>GPL (&gt;= 2)</li>
+</ul>
+</div>
+<div class="developers">
 <h2>Developers</h2>
 <ul class="list-unstyled">
-<li>Johannes Ranke <br><small class="roles"> Author, maintainer </small> <a href="https://orcid.org/0000-0003-4371-6538" target="orcid.widget"><img src="https://members.orcid.org/sites/default/files/vector_iD_icon.svg" class="orcid"></a> </li>
+<li>Johannes Ranke <br><small class="roles"> Author, maintainer </small> <a href="https://orcid.org/0000-0003-4371-6538" target="orcid.widget"><img src="https://members.orcid.org/sites/default/files/vector_iD_icon.svg" class="orcid" height="16"></a> </li>
 </ul>
+</div>
+
+  <div class="dev-status">
 <h2>Dev status</h2>
 <ul class="list-unstyled">
 <li><a href="https://cran.r-project.org/package=drfit"><img src="https://www.r-pkg.org/badges/version/drfit"></a></li>
 </ul>
 </div>
 </div>
+</div>
 
 
       <footer><div class="copyright">
@@ -102,5 +119,7 @@
       </footer>
 </div>
 
+  
+
   </body>
 </html>
diff --git a/docs/pkgdown.css b/docs/pkgdown.css
index 181fe63..6ca2f37 100644
--- a/docs/pkgdown.css
+++ b/docs/pkgdown.css
@@ -1,13 +1,32 @@
-/* Sticker footer */
+/* Sticky footer */
+
+/**
+ * Basic idea: https://philipwalton.github.io/solved-by-flexbox/demos/sticky-footer/
+ * Details: https://github.com/philipwalton/solved-by-flexbox/blob/master/assets/css/components/site.css
+ *
+ * .Site -> body > .container
+ * .Site-content -> body > .container .row
+ * .footer -> footer
+ *
+ * Key idea seems to be to ensure that .container and __all its parents__
+ * have height set to 100%
+ *
+ */
+
+html, body {
+  height: 100%;
+}
+
 body > .container {
   display: flex;
-  padding-top: 60px;
-  min-height: calc(100vh);
+  height: 100%;
   flex-direction: column;
+
+  padding-top: 60px;
 }
 
 body > .container .row {
-  flex: 1;
+  flex: 1 0 auto;
 }
 
 footer {
@@ -16,6 +35,7 @@ footer {
   border-top: 1px solid #e5e5e5;
   color: #666;
   display: flex;
+  flex-shrink: 0;
 }
 footer p {
   margin-bottom: 0;
@@ -38,6 +58,12 @@ img {
   max-width: 100%;
 }
 
+/* Typographic tweaking ---------------------------------*/
+
+.contents h1.page-header {
+  margin-top: calc(-60px + 1em);
+}
+
 /* Section anchors ---------------------------------*/
 
 a.anchor {
@@ -68,7 +94,7 @@ a.anchor {
 
 .contents h1, .contents h2, .contents h3, .contents h4 {
   padding-top: 60px;
-  margin-top: -60px;
+  margin-top: -40px;
 }
 
 /* Static header placement on mobile devices */
@@ -108,7 +134,6 @@ a.anchor {
 /* Reference index & topics ----------------------------------------------- */
 
 .ref-index th {font-weight: normal;}
-.ref-index h2 {font-size: 20px;}
 
 .ref-index td {vertical-align: top;}
 .ref-index .alias {width: 40%;}
@@ -192,3 +217,16 @@ a.sourceLine:hover {
 .hasCopyButton:hover button.btn-copy-ex {
   visibility: visible;
 }
+
+/* mark.js ----------------------------*/
+
+mark {
+  background-color: rgba(255, 255, 51, 0.5);
+  border-bottom: 2px solid rgba(255, 153, 51, 0.3);
+  padding: 1px;
+}
+
+/* vertical spacing after htmlwidgets */
+.html-widget {
+  margin-bottom: 10px;
+}
diff --git a/docs/pkgdown.js b/docs/pkgdown.js
index 64b20df..de9bd72 100644
--- a/docs/pkgdown.js
+++ b/docs/pkgdown.js
@@ -1,94 +1,110 @@
-$(function() {
-
-  $("#sidebar")
-    .stick_in_parent({offset_top: 40})
-    .on('sticky_kit:bottom', function(e) {
-      $(this).parent().css('position', 'static');
-    })
-    .on('sticky_kit:unbottom', function(e) {
-      $(this).parent().css('position', 'relative');
+/* http://gregfranko.com/blog/jquery-best-practices/ */
+(function($) {
+  $(function() {
+
+    $("#sidebar")
+      .stick_in_parent({offset_top: 40})
+      .on('sticky_kit:bottom', function(e) {
+        $(this).parent().css('position', 'static');
+      })
+      .on('sticky_kit:unbottom', function(e) {
+        $(this).parent().css('position', 'relative');
+      });
+
+    $('body').scrollspy({
+      target: '#sidebar',
+      offset: 60
     });
 
-  $('body').scrollspy({
-    target: '#sidebar',
-    offset: 60
-  });
+    $('[data-toggle="tooltip"]').tooltip();
+
+    var cur_path = paths(location.pathname);
+    var links = $("#navbar ul li a");
+    var max_length = -1;
+    var pos = -1;
+    for (var i = 0; i < links.length; i++) {
+      if (links[i].getAttribute("href") === "#")
+        continue;
+      var path = paths(links[i].pathname);
+
+      var length = prefix_length(cur_path, path);
+      if (length > max_length) {
+        max_length = length;
+        pos = i;
+      }
+    }
 
-  var cur_path = paths(location.pathname);
-  $("#navbar ul li a").each(function(index, value) {
-    if (value.text == "Home")
-      return;
-    if (value.getAttribute("href") === "#")
-      return;
-
-    var path = paths(value.pathname);
-    if (is_prefix(cur_path, path)) {
-      // Add class to parent <li>, and enclosing <li> if in dropdown
-      var menu_anchor = $(value);
+    // Add class to parent <li>, and enclosing <li> if in dropdown
+    if (pos >= 0) {
+      var menu_anchor = $(links[pos]);
       menu_anchor.parent().addClass("active");
       menu_anchor.closest("li.dropdown").addClass("active");
     }
   });
-});
 
-function paths(pathname) {
-  var pieces = pathname.split("/");
-  pieces.shift(); // always starts with /
+  function paths(pathname) {
+    var pieces = pathname.split("/");
+    pieces.shift(); // always starts with /
+
+    var end = pieces[pieces.length - 1];
+    if (end === "index.html" || end === "")
+      pieces.pop();
+    return(pieces);
+  }
 
-  var end = pieces[pieces.length - 1];
-  if (end === "index.html" || end === "")
-    pieces.pop();
-  return(pieces);
-}
+  function prefix_length(needle, haystack) {
+    if (needle.length > haystack.length)
+      return(0);
 
-function is_prefix(needle, haystack) {
-  if (needle.length > haystack.lengh)
-    return(false);
+    // Special case for length-0 haystack, since for loop won't run
+    if (haystack.length === 0) {
+      return(needle.length === 0 ? 1 : 0);
+    }
 
-  for (var i = 0; i < haystack.length; i++) {
-    if (needle[i] != haystack[i])
-      return(false);
-  }
+    for (var i = 0; i < haystack.length; i++) {
+      if (needle[i] != haystack[i])
+        return(i);
+    }
 
-  return(true);
-}
+    return(haystack.length);
+  }
 
-/* Clipboard --------------------------*/
+  /* Clipboard --------------------------*/
 
-function changeTooltipMessage(element, msg) {
-  var tooltipOriginalTitle=element.getAttribute('data-original-title');
-  element.setAttribute('data-original-title', msg);
-  $(element).tooltip('show');
-  element.setAttribute('data-original-title', tooltipOriginalTitle);
-}
+  function changeTooltipMessage(element, msg) {
+    var tooltipOriginalTitle=element.getAttribute('data-original-title');
+    element.setAttribute('data-original-title', msg);
+    $(element).tooltip('show');
+    element.setAttribute('data-original-title', tooltipOriginalTitle);
+  }
 
-if(Clipboard.isSupported()) {
-  $(document).ready(function() {
-    var copyButton = "<button type='button' class='btn btn-primary btn-copy-ex' type = 'submit' title='Copy to clipboard' aria-hidden='true' data-toggle='tooltip' data-placement='left auto' data-trigger='hover' data-clipboard-copy><i class='fa fa-copy' aria-hidden='true'></i></button>";
+  if(Clipboard.isSupported()) {
+    $(document).ready(function() {
+      var copyButton = "<button type='button' class='btn btn-primary btn-copy-ex' type = 'submit' title='Copy to clipboard' aria-hidden='true' data-toggle='tooltip' data-placement='left auto' data-trigger='hover' data-clipboard-copy><i class='fa fa-copy' aria-hidden='true'></i></button>";
 
-    $(".examples").addClass("hasCopyButton");
+      $(".examples, div.sourceCode").addClass("hasCopyButton");
 
-    // Insert copy buttons:
-    $(copyButton).prependTo(".hasCopyButton");
+      // Insert copy buttons:
+      $(copyButton).prependTo(".hasCopyButton");
 
-    // Initialize tooltips:
-    $('.btn-copy-ex').tooltip({container: 'body'});
+      // Initialize tooltips:
+      $('.btn-copy-ex').tooltip({container: 'body'});
 
-    // Initialize clipboard:
-    var clipboardBtnCopies = new Clipboard('[data-clipboard-copy]', {
-      text: function(trigger) {
-        return trigger.parentNode.textContent;
-      }
-    });
+      // Initialize clipboard:
+      var clipboardBtnCopies = new Clipboard('[data-clipboard-copy]', {
+        text: function(trigger) {
+          return trigger.parentNode.textContent;
+        }
+      });
 
-    clipboardBtnCopies.on('success', function(e) {
-      changeTooltipMessage(e.trigger, 'Copied!');
-      e.clearSelection();
-    });
+      clipboardBtnCopies.on('success', function(e) {
+        changeTooltipMessage(e.trigger, 'Copied!');
+        e.clearSelection();
+      });
 
-    clipboardBtnCopies.on('error', function() {
-      changeTooltipMessage(e.trigger,'Press Ctrl+C or Command+C to copy');
+      clipboardBtnCopies.on('error', function() {
+        changeTooltipMessage(e.trigger,'Press Ctrl+C or Command+C to copy');
+      });
     });
-  });
-}
-
+  }
+})(window.jQuery || window.$)
diff --git a/docs/pkgdown.yml b/docs/pkgdown.yml
new file mode 100644
index 0000000..6e67788
--- /dev/null
+++ b/docs/pkgdown.yml
@@ -0,0 +1,5 @@
+pandoc: 1.19.2.4
+pkgdown: 1.1.0
+pkgdown_sha: ~
+articles: []
+
diff --git a/docs/reference/IM1xIPC81.html b/docs/reference/IM1xIPC81.html
index 2800440..d14afca 100644
--- a/docs/reference/IM1xIPC81.html
+++ b/docs/reference/IM1xIPC81.html
@@ -21,12 +21,15 @@
 <!-- clipboard.js -->
 <script src="https://cdnjs.cloudflare.com/ajax/libs/clipboard.js/1.7.1/clipboard.min.js" integrity="sha384-cV+rhyOuRHc9Ub/91rihWcGmMmCXDeksTtCihMupQHSsi8GIIRDG0ThDc3HGQFJ3" crossorigin="anonymous"></script>
 
+<!-- sticky kit -->
+<script src="https://cdnjs.cloudflare.com/ajax/libs/sticky-kit/1.1.3/sticky-kit.min.js" integrity="sha256-c4Rlo1ZozqTPE2RLuvbusY3+SU1pQaJC0TjuhygMipw=" crossorigin="anonymous"></script>
+
 <!-- pkgdown -->
 <link href="../pkgdown.css" rel="stylesheet">
-<script src="../jquery.sticky-kit.min.js"></script>
 <script src="../pkgdown.js"></script>
-  
-  
+
+
+
 <meta property="og:title" content="Dose-Response data for 1-methyl-3-alkylimidazolium tetrafluoroborates in IPC-81 cells — IM1xIPC81" />
 
 <meta property="og:description" content="This is the raw data documenting the influence of the alkyl
@@ -40,6 +43,9 @@
   This is a subset (only the BF4 anion) of the data
   shown in Figure 3 in Ranke et al. (2004)." />
 <meta name="twitter:card" content="summary" />
+
+
+
 <!-- mathjax -->
 <script src='https://mathjax.rstudio.com/latest/MathJax.js?config=TeX-AMS-MML_HTMLorMML'></script>
 
@@ -62,8 +68,12 @@
         <span class="icon-bar"></span>
         <span class="icon-bar"></span>
       </button>
-      <a class="navbar-brand" href="../index.html">drfit</a>
+      <span class="navbar-brand">
+        <a class="navbar-link" href="../index.html">drfit</a>
+        <span class="label label-default" data-toggle="tooltip" data-placement="bottom" title="Released package">0.7.1</span>
+      </span>
     </div>
+
     <div id="navbar" class="navbar-collapse collapse">
       <ul class="nav navbar-nav">
         <li>
@@ -80,6 +90,7 @@
       <ul class="nav navbar-nav navbar-right">
         
       </ul>
+      
     </div><!--/.nav-collapse -->
   </div><!--/.container -->
 </div><!--/.navbar -->
@@ -87,12 +98,15 @@
       
       </header>
 
-      <div class="row">
+<div class="row">
   <div class="col-md-9 contents">
     <div class="page-header">
     <h1>Dose-Response data for 1-methyl-3-alkylimidazolium tetrafluoroborates in IPC-81 cells</h1>
+    
+    <div class="hidden name"><code>IM1xIPC81.Rd</code></div>
     </div>
 
+    <div class="ref-description">
     
     <p>This is the raw data documenting the influence of the alkyl
   chain length in 3 position on the toxicity to the
@@ -105,6 +119,7 @@
   This is a subset (only the BF4 anion) of the data
   shown in Figure 3 in Ranke et al. (2004).</p>
     
+    </div>
 
     <pre class="usage"><span class='fu'>data</span>(<span class='no'>IM1xIPC81</span>)</pre>
         
@@ -214,5 +229,8 @@
       </footer>
    </div>
 
+  
+
   </body>
 </html>
+
diff --git a/docs/reference/IM1xVibrio.html b/docs/reference/IM1xVibrio.html
index 22ab40e..594efe1 100644
--- a/docs/reference/IM1xVibrio.html
+++ b/docs/reference/IM1xVibrio.html
@@ -21,12 +21,15 @@
 <!-- clipboard.js -->
 <script src="https://cdnjs.cloudflare.com/ajax/libs/clipboard.js/1.7.1/clipboard.min.js" integrity="sha384-cV+rhyOuRHc9Ub/91rihWcGmMmCXDeksTtCihMupQHSsi8GIIRDG0ThDc3HGQFJ3" crossorigin="anonymous"></script>
 
+<!-- sticky kit -->
+<script src="https://cdnjs.cloudflare.com/ajax/libs/sticky-kit/1.1.3/sticky-kit.min.js" integrity="sha256-c4Rlo1ZozqTPE2RLuvbusY3+SU1pQaJC0TjuhygMipw=" crossorigin="anonymous"></script>
+
 <!-- pkgdown -->
 <link href="../pkgdown.css" rel="stylesheet">
-<script src="../jquery.sticky-kit.min.js"></script>
 <script src="../pkgdown.js"></script>
-  
-  
+
+
+
 <meta property="og:title" content="Dose-Response data for 1-methyl-3-alkylimidazolium tetrafluoroborates in V. fischeri — IM1xVibrio" />
 
 <meta property="og:description" content="This is the raw data documenting the influence of the alkyl chain length in 3
@@ -37,6 +40,9 @@
   IM14 BF4 means 1-methyl-3-butylimidazolium tetrafluoroborate and
   IM1-10 BF4 means 1-methyl-3-decylimidazolium tetrafluoroborate." />
 <meta name="twitter:card" content="summary" />
+
+
+
 <!-- mathjax -->
 <script src='https://mathjax.rstudio.com/latest/MathJax.js?config=TeX-AMS-MML_HTMLorMML'></script>
 
@@ -59,8 +65,12 @@
         <span class="icon-bar"></span>
         <span class="icon-bar"></span>
       </button>
-      <a class="navbar-brand" href="../index.html">drfit</a>
+      <span class="navbar-brand">
+        <a class="navbar-link" href="../index.html">drfit</a>
+        <span class="label label-default" data-toggle="tooltip" data-placement="bottom" title="Released package">0.7.1</span>
+      </span>
     </div>
+
     <div id="navbar" class="navbar-collapse collapse">
       <ul class="nav navbar-nav">
         <li>
@@ -77,6 +87,7 @@
       <ul class="nav navbar-nav navbar-right">
         
       </ul>
+      
     </div><!--/.nav-collapse -->
   </div><!--/.container -->
 </div><!--/.navbar -->
@@ -84,12 +95,15 @@
       
       </header>
 
-      <div class="row">
+<div class="row">
   <div class="col-md-9 contents">
     <div class="page-header">
     <h1>Dose-Response data for 1-methyl-3-alkylimidazolium tetrafluoroborates in V. fischeri</h1>
+    
+    <div class="hidden name"><code>IM1xVibrio.Rd</code></div>
     </div>
 
+    <div class="ref-description">
     
     <p>This is the raw data documenting the influence of the alkyl chain length in 3
   position on the toxicity to the marine luminescent bacteria <em>V.
@@ -99,6 +113,7 @@
   IM14 BF4 means 1-methyl-3-butylimidazolium tetrafluoroborate and
   IM1-10 BF4 means 1-methyl-3-decylimidazolium tetrafluoroborate.</p>
     
+    </div>
 
     <pre class="usage"><span class='fu'>data</span>(<span class='no'>IM1xVibrio</span>)</pre>
         
@@ -248,5 +263,8 @@
       </footer>
    </div>
 
+  
+
   </body>
 </html>
+
diff --git a/docs/reference/XY.html b/docs/reference/XY.html
index 47ef324..2af3026 100644
--- a/docs/reference/XY.html
+++ b/docs/reference/XY.html
@@ -21,17 +21,23 @@
 <!-- clipboard.js -->
 <script src="https://cdnjs.cloudflare.com/ajax/libs/clipboard.js/1.7.1/clipboard.min.js" integrity="sha384-cV+rhyOuRHc9Ub/91rihWcGmMmCXDeksTtCihMupQHSsi8GIIRDG0ThDc3HGQFJ3" crossorigin="anonymous"></script>
 
+<!-- sticky kit -->
+<script src="https://cdnjs.cloudflare.com/ajax/libs/sticky-kit/1.1.3/sticky-kit.min.js" integrity="sha256-c4Rlo1ZozqTPE2RLuvbusY3+SU1pQaJC0TjuhygMipw=" crossorigin="anonymous"></script>
+
 <!-- pkgdown -->
 <link href="../pkgdown.css" rel="stylesheet">
-<script src="../jquery.sticky-kit.min.js"></script>
 <script src="../pkgdown.js"></script>
-  
-  
+
+
+
 <meta property="og:title" content="Dose-Response data for two substances X and Y — XY" />
 
 <meta property="og:description" content="This is just a sample Lemna growth rate data set for two substances
   arbitrarily named X and Y." />
 <meta name="twitter:card" content="summary" />
+
+
+
 <!-- mathjax -->
 <script src='https://mathjax.rstudio.com/latest/MathJax.js?config=TeX-AMS-MML_HTMLorMML'></script>
 
@@ -54,8 +60,12 @@
         <span class="icon-bar"></span>
         <span class="icon-bar"></span>
       </button>
-      <a class="navbar-brand" href="../index.html">drfit</a>
+      <span class="navbar-brand">
+        <a class="navbar-link" href="../index.html">drfit</a>
+        <span class="label label-default" data-toggle="tooltip" data-placement="bottom" title="Released package">0.7.1</span>
+      </span>
     </div>
+
     <div id="navbar" class="navbar-collapse collapse">
       <ul class="nav navbar-nav">
         <li>
@@ -72,6 +82,7 @@
       <ul class="nav navbar-nav navbar-right">
         
       </ul>
+      
     </div><!--/.nav-collapse -->
   </div><!--/.container -->
 </div><!--/.navbar -->
@@ -79,16 +90,20 @@
       
       </header>
 
-      <div class="row">
+<div class="row">
   <div class="col-md-9 contents">
     <div class="page-header">
     <h1>Dose-Response data for two substances X and Y</h1>
+    
+    <div class="hidden name"><code>XY.Rd</code></div>
     </div>
 
+    <div class="ref-description">
     
     <p>This is just a sample Lemna growth rate data set for two substances
   arbitrarily named X and Y.</p>
     
+    </div>
 
     <pre class="usage"><span class='fu'>data</span>(<span class='no'>XY</span>)</pre>
         
@@ -133,5 +148,8 @@
       </footer>
    </div>
 
+  
+
   </body>
 </html>
+
diff --git a/docs/reference/antifoul.html b/docs/reference/antifoul.html
index 8dd00c9..d166ebd 100644
--- a/docs/reference/antifoul.html
+++ b/docs/reference/antifoul.html
@@ -21,19 +21,25 @@
 <!-- clipboard.js -->
 <script src="https://cdnjs.cloudflare.com/ajax/libs/clipboard.js/1.7.1/clipboard.min.js" integrity="sha384-cV+rhyOuRHc9Ub/91rihWcGmMmCXDeksTtCihMupQHSsi8GIIRDG0ThDc3HGQFJ3" crossorigin="anonymous"></script>
 
+<!-- sticky kit -->
+<script src="https://cdnjs.cloudflare.com/ajax/libs/sticky-kit/1.1.3/sticky-kit.min.js" integrity="sha256-c4Rlo1ZozqTPE2RLuvbusY3+SU1pQaJC0TjuhygMipw=" crossorigin="anonymous"></script>
+
 <!-- pkgdown -->
 <link href="../pkgdown.css" rel="stylesheet">
-<script src="../jquery.sticky-kit.min.js"></script>
 <script src="../pkgdown.js"></script>
-  
-  
+
+
+
 <meta property="og:title" content="Dose-Response data for TBT and Zink Pyrithione in IPC-81 cells — antifoul" />
 
 <meta property="og:description" content="This data set shows the response of the rat leukaemic cell line IPC-81 to
   dilution series of tributyltin chloride (TBT) and Zink Pyrithione as retrieved
-  from the "cytotox" database of the UFT Department of Bioorganic Chemistry on
+  from the &quot;cytotox&quot; database of the UFT Department of Bioorganic Chemistry on
   February 25, 2004" />
 <meta name="twitter:card" content="summary" />
+
+
+
 <!-- mathjax -->
 <script src='https://mathjax.rstudio.com/latest/MathJax.js?config=TeX-AMS-MML_HTMLorMML'></script>
 
@@ -56,8 +62,12 @@
         <span class="icon-bar"></span>
         <span class="icon-bar"></span>
       </button>
-      <a class="navbar-brand" href="../index.html">drfit</a>
+      <span class="navbar-brand">
+        <a class="navbar-link" href="../index.html">drfit</a>
+        <span class="label label-default" data-toggle="tooltip" data-placement="bottom" title="Released package">0.7.1</span>
+      </span>
     </div>
+
     <div id="navbar" class="navbar-collapse collapse">
       <ul class="nav navbar-nav">
         <li>
@@ -74,6 +84,7 @@
       <ul class="nav navbar-nav navbar-right">
         
       </ul>
+      
     </div><!--/.nav-collapse -->
   </div><!--/.container -->
 </div><!--/.navbar -->
@@ -81,18 +92,22 @@
       
       </header>
 
-      <div class="row">
+<div class="row">
   <div class="col-md-9 contents">
     <div class="page-header">
     <h1>Dose-Response data for TBT and Zink Pyrithione in IPC-81 cells</h1>
+    
+    <div class="hidden name"><code>antifoul.Rd</code></div>
     </div>
 
+    <div class="ref-description">
     
     <p>This data set shows the response of the rat leukaemic cell line IPC-81 to
   dilution series of tributyltin chloride (TBT) and Zink Pyrithione as retrieved
   from the "cytotox" database of the UFT Department of Bioorganic Chemistry on
   February 25, 2004</p>
     
+    </div>
 
     <pre class="usage"><span class='fu'>data</span>(<span class='no'>antifoul</span>)</pre>
         
@@ -199,5 +214,8 @@
       </footer>
    </div>
 
+  
+
   </body>
 </html>
+
diff --git a/docs/reference/checkcontrols.html b/docs/reference/checkcontrols.html
index 2ab3e4d..d3e4314 100644
--- a/docs/reference/checkcontrols.html
+++ b/docs/reference/checkcontrols.html
@@ -21,17 +21,23 @@
 <!-- clipboard.js -->
 <script src="https://cdnjs.cloudflare.com/ajax/libs/clipboard.js/1.7.1/clipboard.min.js" integrity="sha384-cV+rhyOuRHc9Ub/91rihWcGmMmCXDeksTtCihMupQHSsi8GIIRDG0ThDc3HGQFJ3" crossorigin="anonymous"></script>
 
+<!-- sticky kit -->
+<script src="https://cdnjs.cloudflare.com/ajax/libs/sticky-kit/1.1.3/sticky-kit.min.js" integrity="sha256-c4Rlo1ZozqTPE2RLuvbusY3+SU1pQaJC0TjuhygMipw=" crossorigin="anonymous"></script>
+
 <!-- pkgdown -->
 <link href="../pkgdown.css" rel="stylesheet">
-<script src="../jquery.sticky-kit.min.js"></script>
 <script src="../pkgdown.js"></script>
-  
-  
+
+
+
 <meta property="og:title" content="Check raw data from range of plates or experiments — checkcontrols" />
 
 <meta property="og:description" content="Report control data from a specified range of microtiter plates or
   experiments from a specified database." />
 <meta name="twitter:card" content="summary" />
+
+
+
 <!-- mathjax -->
 <script src='https://mathjax.rstudio.com/latest/MathJax.js?config=TeX-AMS-MML_HTMLorMML'></script>
 
@@ -54,8 +60,12 @@
         <span class="icon-bar"></span>
         <span class="icon-bar"></span>
       </button>
-      <a class="navbar-brand" href="../index.html">drfit</a>
+      <span class="navbar-brand">
+        <a class="navbar-link" href="../index.html">drfit</a>
+        <span class="label label-default" data-toggle="tooltip" data-placement="bottom" title="Released package">0.7.1</span>
+      </span>
     </div>
+
     <div id="navbar" class="navbar-collapse collapse">
       <ul class="nav navbar-nav">
         <li>
@@ -72,6 +82,7 @@
       <ul class="nav navbar-nav navbar-right">
         
       </ul>
+      
     </div><!--/.nav-collapse -->
   </div><!--/.container -->
 </div><!--/.navbar -->
@@ -79,23 +90,27 @@
       
       </header>
 
-      <div class="row">
+<div class="row">
   <div class="col-md-9 contents">
     <div class="page-header">
     <h1>Check raw data from range of plates or experiments</h1>
+    
+    <div class="hidden name"><code>checkcontrols.Rd</code></div>
     </div>
 
+    <div class="ref-description">
     
     <p>Report control data from a specified range of microtiter plates or
   experiments from a specified database.</p>
     
+    </div>
 
     <pre class="usage"><span class='fu'>checkcontrols</span>(<span class='kw'>last</span> <span class='kw'>=</span> <span class='fl'>10</span>, <span class='kw'>id</span> <span class='kw'>=</span> <span class='kw'>NULL</span>, <span class='kw'>db</span> <span class='kw'>=</span> <span class='st'>"cytotox"</span>,
                 <span class='kw'>celltype</span> <span class='kw'>=</span> <span class='st'>"IPC-81"</span>, <span class='kw'>enzymetype</span> <span class='kw'>=</span> <span class='st'>"AChE"</span>,
                 <span class='kw'>organism</span> <span class='kw'>=</span> <span class='st'>"Vibrio fischeri"</span>,
                 <span class='kw'>endpoint</span> <span class='kw'>=</span> <span class='st'>"%"</span>, <span class='kw'>qcc</span> <span class='kw'>=</span> <span class='fu'>c</span>(<span class='st'>"R"</span>, <span class='st'>"xbar"</span>))</pre>
     
-    <h2 class="hasAnchor" id="arguments"><a class="anchor" href="#arguments"></a> Arguments</h2>
+    <h2 class="hasAnchor" id="arguments"><a class="anchor" href="#arguments"></a>Arguments</h2>
     <table class="ref-arguments">
     <colgroup><col class="name" /><col class="desc" /></colgroup>
     <tr>
@@ -182,5 +197,8 @@
       </footer>
    </div>
 
+  
+
   </body>
 </html>
+
diff --git a/docs/reference/checkexperiment.html b/docs/reference/checkexperiment.html
index 3ec5a09..0712cd4 100644
--- a/docs/reference/checkexperiment.html
+++ b/docs/reference/checkexperiment.html
@@ -21,17 +21,23 @@
 <!-- clipboard.js -->
 <script src="https://cdnjs.cloudflare.com/ajax/libs/clipboard.js/1.7.1/clipboard.min.js" integrity="sha384-cV+rhyOuRHc9Ub/91rihWcGmMmCXDeksTtCihMupQHSsi8GIIRDG0ThDc3HGQFJ3" crossorigin="anonymous"></script>
 
+<!-- sticky kit -->
+<script src="https://cdnjs.cloudflare.com/ajax/libs/sticky-kit/1.1.3/sticky-kit.min.js" integrity="sha256-c4Rlo1ZozqTPE2RLuvbusY3+SU1pQaJC0TjuhygMipw=" crossorigin="anonymous"></script>
+
 <!-- pkgdown -->
 <link href="../pkgdown.css" rel="stylesheet">
-<script src="../jquery.sticky-kit.min.js"></script>
 <script src="../pkgdown.js"></script>
-  
-  
+
+
+
 <meta property="og:title" content="Check raw data from a specified experiment or microtiter plate — checkexperiment" />
 
 <meta property="og:description" content="Report metadata from a specified experiment or microtiter plate from a
   specified database, box plot controls, and plot the dose-response data." />
 <meta name="twitter:card" content="summary" />
+
+
+
 <!-- mathjax -->
 <script src='https://mathjax.rstudio.com/latest/MathJax.js?config=TeX-AMS-MML_HTMLorMML'></script>
 
@@ -54,8 +60,12 @@
         <span class="icon-bar"></span>
         <span class="icon-bar"></span>
       </button>
-      <a class="navbar-brand" href="../index.html">drfit</a>
+      <span class="navbar-brand">
+        <a class="navbar-link" href="../index.html">drfit</a>
+        <span class="label label-default" data-toggle="tooltip" data-placement="bottom" title="Released package">0.7.1</span>
+      </span>
     </div>
+
     <div id="navbar" class="navbar-collapse collapse">
       <ul class="nav navbar-nav">
         <li>
@@ -72,6 +82,7 @@
       <ul class="nav navbar-nav navbar-right">
         
       </ul>
+      
     </div><!--/.nav-collapse -->
   </div><!--/.container -->
 </div><!--/.navbar -->
@@ -79,21 +90,25 @@
       
       </header>
 
-      <div class="row">
+<div class="row">
   <div class="col-md-9 contents">
     <div class="page-header">
     <h1>Check raw data from a specified experiment or microtiter plate</h1>
+    
+    <div class="hidden name"><code>checkexperiment.Rd</code></div>
     </div>
 
+    <div class="ref-description">
     
     <p>Report metadata from a specified experiment or microtiter plate from a
   specified database, box plot controls, and plot the dose-response data.</p>
     
+    </div>
 
     <pre class="usage"><span class='fu'>checkplate</span>(<span class='no'>id</span>, <span class='kw'>db</span> <span class='kw'>=</span> <span class='st'>"cytotox"</span>)
   <span class='fu'>checkexperiment</span>(<span class='no'>id</span>, <span class='kw'>db</span> <span class='kw'>=</span> <span class='st'>"ecotox"</span>, <span class='kw'>endpoint</span> <span class='kw'>=</span> <span class='st'>"%"</span>)</pre>
     
-    <h2 class="hasAnchor" id="arguments"><a class="anchor" href="#arguments"></a> Arguments</h2>
+    <h2 class="hasAnchor" id="arguments"><a class="anchor" href="#arguments"></a>Arguments</h2>
     <table class="ref-arguments">
     <colgroup><col class="name" /><col class="desc" /></colgroup>
     <tr>
@@ -155,5 +170,8 @@
       </footer>
    </div>
 
+  
+
   </body>
 </html>
+
diff --git a/docs/reference/checksubstance.html b/docs/reference/checksubstance.html
index 184a757..3f07df2 100644
--- a/docs/reference/checksubstance.html
+++ b/docs/reference/checksubstance.html
@@ -21,17 +21,23 @@
 <!-- clipboard.js -->
 <script src="https://cdnjs.cloudflare.com/ajax/libs/clipboard.js/1.7.1/clipboard.min.js" integrity="sha384-cV+rhyOuRHc9Ub/91rihWcGmMmCXDeksTtCihMupQHSsi8GIIRDG0ThDc3HGQFJ3" crossorigin="anonymous"></script>
 
+<!-- sticky kit -->
+<script src="https://cdnjs.cloudflare.com/ajax/libs/sticky-kit/1.1.3/sticky-kit.min.js" integrity="sha256-c4Rlo1ZozqTPE2RLuvbusY3+SU1pQaJC0TjuhygMipw=" crossorigin="anonymous"></script>
+
 <!-- pkgdown -->
 <link href="../pkgdown.css" rel="stylesheet">
-<script src="../jquery.sticky-kit.min.js"></script>
 <script src="../pkgdown.js"></script>
-  
-  
+
+
+
 <meta property="og:title" content="Check raw data for a specified substance — checksubstance" />
 
 <meta property="og:description" content="Report metadata for a specified substance from a specified database, and plot
   the data." />
 <meta name="twitter:card" content="summary" />
+
+
+
 <!-- mathjax -->
 <script src='https://mathjax.rstudio.com/latest/MathJax.js?config=TeX-AMS-MML_HTMLorMML'></script>
 
@@ -54,8 +60,12 @@
         <span class="icon-bar"></span>
         <span class="icon-bar"></span>
       </button>
-      <a class="navbar-brand" href="../index.html">drfit</a>
+      <span class="navbar-brand">
+        <a class="navbar-link" href="../index.html">drfit</a>
+        <span class="label label-default" data-toggle="tooltip" data-placement="bottom" title="Released package">0.7.1</span>
+      </span>
     </div>
+
     <div id="navbar" class="navbar-collapse collapse">
       <ul class="nav navbar-nav">
         <li>
@@ -72,6 +82,7 @@
       <ul class="nav navbar-nav navbar-right">
         
       </ul>
+      
     </div><!--/.nav-collapse -->
   </div><!--/.container -->
 </div><!--/.navbar -->
@@ -79,23 +90,27 @@
       
       </header>
 
-      <div class="row">
+<div class="row">
   <div class="col-md-9 contents">
     <div class="page-header">
     <h1>Check raw data for a specified substance</h1>
+    
+    <div class="hidden name"><code>checksubstance.Rd</code></div>
     </div>
 
+    <div class="ref-description">
     
     <p>Report metadata for a specified substance from a specified database, and plot
   the data.</p>
     
+    </div>
 
     <pre class="usage"><span class='fu'>checksubstance</span>(<span class='no'>substance</span>, <span class='kw'>db</span> <span class='kw'>=</span> <span class='st'>"cytotox"</span>, <span class='kw'>experimentator</span> <span class='kw'>=</span> <span class='st'>"%"</span>,
     <span class='kw'>celltype</span> <span class='kw'>=</span> <span class='st'>"%"</span>, <span class='kw'>enzymetype</span> <span class='kw'>=</span> <span class='st'>"%"</span>, <span class='kw'>organism</span> <span class='kw'>=</span> <span class='st'>"%"</span>,
     <span class='kw'>endpoint</span> <span class='kw'>=</span> <span class='st'>"%"</span>,
     <span class='kw'>whereClause</span> <span class='kw'>=</span> <span class='st'>"1"</span>, <span class='kw'>ok</span> <span class='kw'>=</span> <span class='st'>"%"</span>)</pre>
     
-    <h2 class="hasAnchor" id="arguments"><a class="anchor" href="#arguments"></a> Arguments</h2>
+    <h2 class="hasAnchor" id="arguments"><a class="anchor" href="#arguments"></a>Arguments</h2>
     <table class="ref-arguments">
     <colgroup><col class="name" /><col class="desc" /></colgroup>
     <tr>
@@ -189,5 +204,8 @@
       </footer>
    </div>
 
+  
+
   </body>
 </html>
+
diff --git a/docs/reference/drcfit.html b/docs/reference/drcfit.html
index b208f4b..d08b4b0 100644
--- a/docs/reference/drcfit.html
+++ b/docs/reference/drcfit.html
@@ -21,17 +21,23 @@
 <!-- clipboard.js -->
 <script src="https://cdnjs.cloudflare.com/ajax/libs/clipboard.js/1.7.1/clipboard.min.js" integrity="sha384-cV+rhyOuRHc9Ub/91rihWcGmMmCXDeksTtCihMupQHSsi8GIIRDG0ThDc3HGQFJ3" crossorigin="anonymous"></script>
 
+<!-- sticky kit -->
+<script src="https://cdnjs.cloudflare.com/ajax/libs/sticky-kit/1.1.3/sticky-kit.min.js" integrity="sha256-c4Rlo1ZozqTPE2RLuvbusY3+SU1pQaJC0TjuhygMipw=" crossorigin="anonymous"></script>
+
 <!-- pkgdown -->
 <link href="../pkgdown.css" rel="stylesheet">
-<script src="../jquery.sticky-kit.min.js"></script>
 <script src="../pkgdown.js"></script>
-  
-  
+
+
+
 <meta property="og:title" content="Fit dose-response models using the drc package — drcfit" />
 
 <meta property="og:description" content="Fit dose-response relationships to dose-response data and calculate
   biometric results for (eco)toxicity evaluation using the drc package" />
 <meta name="twitter:card" content="summary" />
+
+
+
 <!-- mathjax -->
 <script src='https://mathjax.rstudio.com/latest/MathJax.js?config=TeX-AMS-MML_HTMLorMML'></script>
 
@@ -54,8 +60,12 @@
         <span class="icon-bar"></span>
         <span class="icon-bar"></span>
       </button>
-      <a class="navbar-brand" href="../index.html">drfit</a>
+      <span class="navbar-brand">
+        <a class="navbar-link" href="../index.html">drfit</a>
+        <span class="label label-default" data-toggle="tooltip" data-placement="bottom" title="Released package">0.7.1</span>
+      </span>
     </div>
+
     <div id="navbar" class="navbar-collapse collapse">
       <ul class="nav navbar-nav">
         <li>
@@ -72,6 +82,7 @@
       <ul class="nav navbar-nav navbar-right">
         
       </ul>
+      
     </div><!--/.nav-collapse -->
   </div><!--/.container -->
 </div><!--/.navbar -->
@@ -79,22 +90,26 @@
       
       </header>
 
-      <div class="row">
+<div class="row">
   <div class="col-md-9 contents">
     <div class="page-header">
     <h1>Fit dose-response models using the drc package</h1>
+    
+    <div class="hidden name"><code>drcfit.Rd</code></div>
     </div>
 
+    <div class="ref-description">
     
     <p>Fit dose-response relationships to dose-response data and calculate
   biometric results for (eco)toxicity evaluation using the drc package</p>
     
+    </div>
 
     <pre class="usage"><span class='fu'>drcfit</span>(<span class='no'>data</span>, <span class='kw'>chooseone</span> <span class='kw'>=</span> <span class='fl'>TRUE</span>, <span class='kw'>probit</span> <span class='kw'>=</span> <span class='fl'>TRUE</span>, <span class='kw'>logit</span> <span class='kw'>=</span> <span class='fl'>FALSE</span>,
   <span class='kw'>weibull</span> <span class='kw'>=</span> <span class='fl'>FALSE</span>, <span class='kw'>linlogit</span> <span class='kw'>=</span> <span class='fl'>FALSE</span>, <span class='kw'>level</span> <span class='kw'>=</span> <span class='fl'>0.95</span>,
   <span class='kw'>showED50</span> <span class='kw'>=</span> <span class='fl'>FALSE</span>, <span class='kw'>EDx</span> <span class='kw'>=</span> <span class='kw'>NULL</span>)</pre>
     
-    <h2 class="hasAnchor" id="arguments"><a class="anchor" href="#arguments"></a> Arguments</h2>
+    <h2 class="hasAnchor" id="arguments"><a class="anchor" href="#arguments"></a>Arguments</h2>
     <table class="ref-arguments">
     <colgroup><col class="name" /><col class="desc" /></colgroup>
     <tr>
@@ -215,9 +230,9 @@
     
     <h2 class="hasAnchor" id="see-also"><a class="anchor" href="#see-also"></a>See also</h2>
 
-    <p>Further examples are given in help pages to the datasets
+    <div class='dont-index'><p>Further examples are given in help pages to the datasets
   <code>antifoul</code>, <code>IM1xIPC81</code> and
-  <code>IM1xVibrio</code>.</p>
+  <code>IM1xVibrio</code>.</p></div>
     
 
     <h2 class="hasAnchor" id="examples"><a class="anchor" href="#examples"></a>Examples</h2>
@@ -270,5 +285,8 @@
       </footer>
    </div>
 
+  
+
   </body>
 </html>
+
diff --git a/docs/reference/drdata.html b/docs/reference/drdata.html
index 6387e76..fc962be 100644
--- a/docs/reference/drdata.html
+++ b/docs/reference/drdata.html
@@ -21,16 +21,22 @@
 <!-- clipboard.js -->
 <script src="https://cdnjs.cloudflare.com/ajax/libs/clipboard.js/1.7.1/clipboard.min.js" integrity="sha384-cV+rhyOuRHc9Ub/91rihWcGmMmCXDeksTtCihMupQHSsi8GIIRDG0ThDc3HGQFJ3" crossorigin="anonymous"></script>
 
+<!-- sticky kit -->
+<script src="https://cdnjs.cloudflare.com/ajax/libs/sticky-kit/1.1.3/sticky-kit.min.js" integrity="sha256-c4Rlo1ZozqTPE2RLuvbusY3+SU1pQaJC0TjuhygMipw=" crossorigin="anonymous"></script>
+
 <!-- pkgdown -->
 <link href="../pkgdown.css" rel="stylesheet">
-<script src="../jquery.sticky-kit.min.js"></script>
 <script src="../pkgdown.js"></script>
-  
-  
+
+
+
 <meta property="og:title" content="Get dose-response data via RODBC — drdata" />
 
 <meta property="og:description" content="Get dose-response data from an adequate ODBC data source" />
 <meta name="twitter:card" content="summary" />
+
+
+
 <!-- mathjax -->
 <script src='https://mathjax.rstudio.com/latest/MathJax.js?config=TeX-AMS-MML_HTMLorMML'></script>
 
@@ -53,8 +59,12 @@
         <span class="icon-bar"></span>
         <span class="icon-bar"></span>
       </button>
-      <a class="navbar-brand" href="../index.html">drfit</a>
+      <span class="navbar-brand">
+        <a class="navbar-link" href="../index.html">drfit</a>
+        <span class="label label-default" data-toggle="tooltip" data-placement="bottom" title="Released package">0.7.1</span>
+      </span>
     </div>
+
     <div id="navbar" class="navbar-collapse collapse">
       <ul class="nav navbar-nav">
         <li>
@@ -71,6 +81,7 @@
       <ul class="nav navbar-nav navbar-right">
         
       </ul>
+      
     </div><!--/.nav-collapse -->
   </div><!--/.container -->
 </div><!--/.navbar -->
@@ -78,21 +89,25 @@
       
       </header>
 
-      <div class="row">
+<div class="row">
   <div class="col-md-9 contents">
     <div class="page-header">
     <h1>Get dose-response data via RODBC</h1>
+    
+    <div class="hidden name"><code>drdata.Rd</code></div>
     </div>
 
+    <div class="ref-description">
     
     <p>Get dose-response data from an adequate ODBC data source</p>
     
+    </div>
 
     <pre class="usage"><span class='fu'>drdata</span>(<span class='no'>substances</span>, <span class='kw'>experimentator</span> <span class='kw'>=</span> <span class='st'>"%"</span>, <span class='kw'>db</span> <span class='kw'>=</span> <span class='st'>"cytotox"</span>, <span class='kw'>celltype</span> <span class='kw'>=</span> <span class='st'>"IPC-81"</span>,
     <span class='kw'>enzymetype</span><span class='kw'>=</span><span class='st'>"AChE"</span>, <span class='kw'>organism</span><span class='kw'>=</span><span class='st'>"Vibrio fischeri"</span>, <span class='kw'>endpoint</span><span class='kw'>=</span><span class='st'>"Luminescence"</span>,
     <span class='kw'>whereClause</span> <span class='kw'>=</span> <span class='st'>"1"</span>, <span class='kw'>ok</span> <span class='kw'>=</span> <span class='st'>"'ok','no fit'"</span>)</pre>
     
-    <h2 class="hasAnchor" id="arguments"><a class="anchor" href="#arguments"></a> Arguments</h2>
+    <h2 class="hasAnchor" id="arguments"><a class="anchor" href="#arguments"></a>Arguments</h2>
     <table class="ref-arguments">
     <colgroup><col class="name" /><col class="desc" /></colgroup>
     <tr>
@@ -165,55 +180,24 @@
   myODBC. Then, under Unix, you can use iodbc or unixodbc for setting up the
   respective data source with data source name (DSN) "cytotox". For my
   setting using unixodbc, I am using the file <code class="file">/etc/odbcinst.ini</code>
-  containing:</p><table><tr><td>
-    [MySQL] </td>
-<td> </td>
-<td> </td>
-</tr><tr><td>
-    Description </td>
-<td> = </td>
-<td> MySQL driver for ODBC </td>
-</tr><tr><td>
-    Driver </td>
-<td> = </td>
-<td> /usr/local/lib/libmyodbc.so </td>
-</tr><tr><td>
-    Setup </td>
-<td> = </td>
-<td> /usr/lib/odbc/libodbcmyS.so </td>
-</tr></table><p>and the file <code class="file">/etc/odbc.ini</code> containing:</p><table><tr><td>
-    [cytotox] </td>
-<td> </td>
-<td> </td>
-</tr><tr><td>
-    Description </td>
-<td> = </td>
-<td> Cytotoxicity database of the department of bioorganic chemistry, UFT Bremen </td>
-</tr><tr><td>
-    Driver </td>
-<td> = </td>
-<td> MySQL </td>
-</tr><tr><td>
-    Trace </td>
-<td> = </td>
-<td> Yes  </td>
-</tr><tr><td>
-    TraceFile </td>
-<td> = </td>
-<td> /tmp/odbc.log  </td>
-</tr><tr><td>
-    Database </td>
-<td> = </td>
-<td> cytotox  </td>
-</tr><tr><td>
-    Server </td>
-<td> = </td>
-<td> eckehaat  </td>
-</tr><tr><td>
-    Port </td>
-<td> = </td>
-<td> 3306  </td>
-</tr></table>
+  containing:</p><table class='table'>
+<tr><td>[MySQL]</td><td></td><td></td></tr>
+<tr><td>Description</td><td>=</td><td>MySQL driver for ODBC</td></tr>
+<tr><td>Driver</td><td>=</td><td>/usr/local/lib/libmyodbc.so</td></tr>
+<tr><td>Setup</td><td>=</td><td>/usr/lib/odbc/libodbcmyS.so</td></tr>
+<tr><td></td><td>[MySQL]</td><td></td></tr>
+</table>
+<p>and the file <code class="file">/etc/odbc.ini</code> containing:</p><table class='table'>
+<tr><td>[cytotox]</td><td></td><td></td></tr>
+<tr><td>Description</td><td>=</td><td>Cytotoxicity database of the department of bioorganic chemistry, UFT Bremen</td></tr>
+<tr><td>Driver</td><td>=</td><td>MySQL</td></tr>
+<tr><td>Trace</td><td>=</td><td>Yes</td></tr>
+<tr><td>TraceFile</td><td>=</td><td>/tmp/odbc.log</td></tr>
+<tr><td>Database</td><td>=</td><td>cytotox</td></tr>
+<tr><td>Server</td><td>=</td><td>eckehaat</td></tr>
+<tr><td>Port</td><td>=</td><td>3306</td></tr>
+<tr><td></td><td>[cytotox]</td><td></td></tr>
+</table>
     
 
     <h2 class="hasAnchor" id="examples"><a class="anchor" href="#examples"></a>Examples</h2>
@@ -256,5 +240,8 @@
       </footer>
    </div>
 
+  
+
   </body>
 </html>
+
diff --git a/docs/reference/drfit-package-1.png b/docs/reference/drfit-package-1.png
index 64d831f..62e80fb 100644
--- a/docs/reference/drfit-package-1.png
+++ b/docs/reference/drfit-package-1.png
diff --git a/docs/reference/drfit-package.html b/docs/reference/drfit-package.html
index 1ce4fed..d2aa326 100644
--- a/docs/reference/drfit-package.html
+++ b/docs/reference/drfit-package.html
@@ -21,16 +21,22 @@
 <!-- clipboard.js -->
 <script src="https://cdnjs.cloudflare.com/ajax/libs/clipboard.js/1.7.1/clipboard.min.js" integrity="sha384-cV+rhyOuRHc9Ub/91rihWcGmMmCXDeksTtCihMupQHSsi8GIIRDG0ThDc3HGQFJ3" crossorigin="anonymous"></script>
 
+<!-- sticky kit -->
+<script src="https://cdnjs.cloudflare.com/ajax/libs/sticky-kit/1.1.3/sticky-kit.min.js" integrity="sha256-c4Rlo1ZozqTPE2RLuvbusY3+SU1pQaJC0TjuhygMipw=" crossorigin="anonymous"></script>
+
 <!-- pkgdown -->
 <link href="../pkgdown.css" rel="stylesheet">
-<script src="../jquery.sticky-kit.min.js"></script>
 <script src="../pkgdown.js"></script>
-  
-  
+
+
+
 <meta property="og:title" content="Dose-response data evaluation — drfit-package" />
 
 <meta property="og:description" content="See ../DESCRIPTION" />
 <meta name="twitter:card" content="summary" />
+
+
+
 <!-- mathjax -->
 <script src='https://mathjax.rstudio.com/latest/MathJax.js?config=TeX-AMS-MML_HTMLorMML'></script>
 
@@ -53,8 +59,12 @@
         <span class="icon-bar"></span>
         <span class="icon-bar"></span>
       </button>
-      <a class="navbar-brand" href="../index.html">drfit</a>
+      <span class="navbar-brand">
+        <a class="navbar-link" href="../index.html">drfit</a>
+        <span class="label label-default" data-toggle="tooltip" data-placement="bottom" title="Released package">0.7.1</span>
+      </span>
     </div>
+
     <div id="navbar" class="navbar-collapse collapse">
       <ul class="nav navbar-nav">
         <li>
@@ -71,6 +81,7 @@
       <ul class="nav navbar-nav navbar-right">
         
       </ul>
+      
     </div><!--/.nav-collapse -->
   </div><!--/.container -->
 </div><!--/.navbar -->
@@ -78,15 +89,19 @@
       
       </header>
 
-      <div class="row">
+<div class="row">
   <div class="col-md-9 contents">
     <div class="page-header">
     <h1>Dose-response data evaluation</h1>
+    
+    <div class="hidden name"><code>drfit-package.Rd</code></div>
     </div>
 
+    <div class="ref-description">
     
     <p>See <a href='../DESCRIPTION'>../DESCRIPTION</a></p>
     
+    </div>
 
         
     <h2 class="hasAnchor" id="details"><a class="anchor" href="#details"></a>Details</h2>
@@ -102,9 +117,9 @@ of R for chemists.</p>
     
     <h2 class="hasAnchor" id="see-also"><a class="anchor" href="#see-also"></a>See also</h2>
 
-    <p>On CRAN, there is another, more statistically sophisticated package with
+    <div class='dont-index'><p>On CRAN, there is another, more statistically sophisticated package with
 similar functionality called <code>drc</code>. I think the advantage of my package
-is its user-friendliness.</p>
+is its user-friendliness.</p></div>
     
 
     <h2 class="hasAnchor" id="examples"><a class="anchor" href="#examples"></a>Examples</h2>
@@ -116,7 +131,7 @@ is its user-friendliness.</p>
 #&gt; 2 Zn Pyrithion  27  81 -2.1 2.0 probit   -0.40 -0.51 -0.292 microM  0.23 -0.40
 #&gt;      b
 #&gt; 1 0.68
-#&gt; 2 0.42</div><div class='input'><span class='fu'>drplot</span>(<span class='no'>r</span>,<span class='no'>antifoul</span>,<span class='kw'>overlay</span><span class='kw'>=</span><span class='fl'>TRUE</span>,<span class='kw'>bw</span><span class='kw'>=</span><span class='fl'>FALSE</span>)</div><div class='img'><img src='drfit-package-1.png' alt='' width='700' height='432.632880098887' /></div></pre>
+#&gt; 2 0.42</div><div class='input'><span class='fu'>drplot</span>(<span class='no'>r</span>,<span class='no'>antifoul</span>,<span class='kw'>overlay</span><span class='kw'>=</span><span class='fl'>TRUE</span>,<span class='kw'>bw</span><span class='kw'>=</span><span class='fl'>FALSE</span>)</div><div class='img'><img src='drfit-package-1.png' alt='' width='700' height='433' /></div></pre>
   </div>
   <div class="col-md-3 hidden-xs hidden-sm" id="sidebar">
     <h2>Contents</h2>
@@ -150,5 +165,8 @@ Author and Maintainer: Johannes Ranke &lt;jranke@uni-bremen.de&gt;
       </footer>
    </div>
 
+  
+
   </body>
 </html>
+
diff --git a/docs/reference/drfit.html b/docs/reference/drfit.html
index 4430a5b..4aa7935 100644
--- a/docs/reference/drfit.html
+++ b/docs/reference/drfit.html
@@ -21,17 +21,23 @@
 <!-- clipboard.js -->
 <script src="https://cdnjs.cloudflare.com/ajax/libs/clipboard.js/1.7.1/clipboard.min.js" integrity="sha384-cV+rhyOuRHc9Ub/91rihWcGmMmCXDeksTtCihMupQHSsi8GIIRDG0ThDc3HGQFJ3" crossorigin="anonymous"></script>
 
+<!-- sticky kit -->
+<script src="https://cdnjs.cloudflare.com/ajax/libs/sticky-kit/1.1.3/sticky-kit.min.js" integrity="sha256-c4Rlo1ZozqTPE2RLuvbusY3+SU1pQaJC0TjuhygMipw=" crossorigin="anonymous"></script>
+
 <!-- pkgdown -->
 <link href="../pkgdown.css" rel="stylesheet">
-<script src="../jquery.sticky-kit.min.js"></script>
 <script src="../pkgdown.js"></script>
-  
-  
+
+
+
 <meta property="og:title" content="Fit dose-response models — drfit" />
 
 <meta property="og:description" content="Fit dose-response relationships to dose-response data and calculate
   biometric results for (eco)toxicity evaluation" />
 <meta name="twitter:card" content="summary" />
+
+
+
 <!-- mathjax -->
 <script src='https://mathjax.rstudio.com/latest/MathJax.js?config=TeX-AMS-MML_HTMLorMML'></script>
 
@@ -54,8 +60,12 @@
         <span class="icon-bar"></span>
         <span class="icon-bar"></span>
       </button>
-      <a class="navbar-brand" href="../index.html">drfit</a>
+      <span class="navbar-brand">
+        <a class="navbar-link" href="../index.html">drfit</a>
+        <span class="label label-default" data-toggle="tooltip" data-placement="bottom" title="Released package">0.7.1</span>
+      </span>
     </div>
+
     <div id="navbar" class="navbar-collapse collapse">
       <ul class="nav navbar-nav">
         <li>
@@ -72,6 +82,7 @@
       <ul class="nav navbar-nav navbar-right">
         
       </ul>
+      
     </div><!--/.nav-collapse -->
   </div><!--/.container -->
 </div><!--/.navbar -->
@@ -79,16 +90,20 @@
       
       </header>
 
-      <div class="row">
+<div class="row">
   <div class="col-md-9 contents">
     <div class="page-header">
     <h1>Fit dose-response models</h1>
+    
+    <div class="hidden name"><code>drfit.Rd</code></div>
     </div>
 
+    <div class="ref-description">
     
     <p>Fit dose-response relationships to dose-response data and calculate
   biometric results for (eco)toxicity evaluation</p>
     
+    </div>
 
     <pre class="usage"><span class='fu'>drfit</span>(<span class='no'>data</span>, <span class='kw'>startlogED50</span> <span class='kw'>=</span> <span class='fl'>NA</span>, <span class='kw'>chooseone</span> <span class='kw'>=</span> <span class='fl'>TRUE</span>, <span class='kw'>probit</span> <span class='kw'>=</span> <span class='fl'>TRUE</span>, <span class='kw'>logit</span> <span class='kw'>=</span> <span class='fl'>FALSE</span>,
   <span class='kw'>weibull</span> <span class='kw'>=</span> <span class='fl'>FALSE</span>, <span class='kw'>linlogit</span> <span class='kw'>=</span> <span class='fl'>FALSE</span>, <span class='kw'>level</span> <span class='kw'>=</span> <span class='fl'>0.95</span>, <span class='kw'>linlogitWrong</span> <span class='kw'>=</span> <span class='fl'>NA</span>,
@@ -96,7 +111,7 @@
   <span class='kw'>showED50</span> <span class='kw'>=</span> <span class='fl'>FALSE</span>,
   <span class='kw'>EDx</span> <span class='kw'>=</span> <span class='kw'>NULL</span>, <span class='kw'>EDx.tolerance</span> <span class='kw'>=</span> <span class='fl'>1e-4</span>)</pre>
     
-    <h2 class="hasAnchor" id="arguments"><a class="anchor" href="#arguments"></a> Arguments</h2>
+    <h2 class="hasAnchor" id="arguments"><a class="anchor" href="#arguments"></a>Arguments</h2>
     <table class="ref-arguments">
     <colgroup><col class="name" /><col class="desc" /></colgroup>
     <tr>
@@ -255,12 +270,12 @@
     
     <h2 class="hasAnchor" id="see-also"><a class="anchor" href="#see-also"></a>See also</h2>
 
-    <p>Further examples are given in help pages to the datasets
+    <div class='dont-index'><p>Further examples are given in help pages to the datasets
   <code>antifoul</code>, <code>IM1xIPC81</code> and
   <code>IM1xVibrio</code>.
   Since version 0.6.1 of this package, there is a drop-in replacement function
   <code>drcfit</code> which internally uses the drc package and also gives
-  confidence intervals for EDx values via this package.</p>
+  confidence intervals for EDx values via this package.</p></div>
     
 
     <h2 class="hasAnchor" id="examples"><a class="anchor" href="#examples"></a>Examples</h2>
@@ -309,5 +324,8 @@
       </footer>
    </div>
 
+  
+
   </body>
 </html>
+
diff --git a/docs/reference/drplot-1.png b/docs/reference/drplot-1.png
new file mode 100644
index 0000000..bcddcd1
--- /dev/null
+++ b/docs/reference/drplot-1.png
diff --git a/docs/reference/drplot-2.png b/docs/reference/drplot-2.png
new file mode 100644
index 0000000..75a75af
--- /dev/null
+++ b/docs/reference/drplot-2.png
diff --git a/docs/reference/drplot.html b/docs/reference/drplot.html
index b64d4e5..e5cbb22 100644
--- a/docs/reference/drplot.html
+++ b/docs/reference/drplot.html
@@ -21,17 +21,23 @@
 <!-- clipboard.js -->
 <script src="https://cdnjs.cloudflare.com/ajax/libs/clipboard.js/1.7.1/clipboard.min.js" integrity="sha384-cV+rhyOuRHc9Ub/91rihWcGmMmCXDeksTtCihMupQHSsi8GIIRDG0ThDc3HGQFJ3" crossorigin="anonymous"></script>
 
+<!-- sticky kit -->
+<script src="https://cdnjs.cloudflare.com/ajax/libs/sticky-kit/1.1.3/sticky-kit.min.js" integrity="sha256-c4Rlo1ZozqTPE2RLuvbusY3+SU1pQaJC0TjuhygMipw=" crossorigin="anonymous"></script>
+
 <!-- pkgdown -->
 <link href="../pkgdown.css" rel="stylesheet">
-<script src="../jquery.sticky-kit.min.js"></script>
 <script src="../pkgdown.js"></script>
-  
-  
+
+
+
 <meta property="og:title" content="Plot dose-response models — drplot" />
 
 <meta property="og:description" content="Produce graphics of dose-response data and dose-response relationships
   either combined or separately, for one or more substances." />
 <meta name="twitter:card" content="summary" />
+
+
+
 <!-- mathjax -->
 <script src='https://mathjax.rstudio.com/latest/MathJax.js?config=TeX-AMS-MML_HTMLorMML'></script>
 
@@ -54,8 +60,12 @@
         <span class="icon-bar"></span>
         <span class="icon-bar"></span>
       </button>
-      <a class="navbar-brand" href="../index.html">drfit</a>
+      <span class="navbar-brand">
+        <a class="navbar-link" href="../index.html">drfit</a>
+        <span class="label label-default" data-toggle="tooltip" data-placement="bottom" title="Released package">0.7.1</span>
+      </span>
     </div>
+
     <div id="navbar" class="navbar-collapse collapse">
       <ul class="nav navbar-nav">
         <li>
@@ -72,6 +82,7 @@
       <ul class="nav navbar-nav navbar-right">
         
       </ul>
+      
     </div><!--/.nav-collapse -->
   </div><!--/.container -->
 </div><!--/.navbar -->
@@ -79,22 +90,26 @@
       
       </header>
 
-      <div class="row">
+<div class="row">
   <div class="col-md-9 contents">
     <div class="page-header">
     <h1>Plot dose-response models</h1>
+    
+    <div class="hidden name"><code>drplot.Rd</code></div>
     </div>
 
+    <div class="ref-description">
     
     <p>Produce graphics of dose-response data and dose-response relationships
   either combined or separately, for one or more substances.</p>
     
+    </div>
 
     <pre class="usage"><span class='fu'>drplot</span>(<span class='no'>drresults</span>, <span class='no'>data</span>, <span class='no'>dtype</span>, <span class='no'>alpha</span>, <span class='no'>ctype</span>, <span class='no'>path</span>,
      <span class='no'>fileprefix</span>, <span class='no'>overlay</span>, <span class='no'>xlim</span>, <span class='no'>ylim</span>, <span class='no'>xlab</span>, <span class='no'>ylab</span>, <span class='no'>axes</span>, <span class='no'>frame.plot</span>, <span class='no'>postscript</span>,
      <span class='no'>pdf</span>, <span class='no'>png</span>, <span class='no'>bw</span>, <span class='no'>pointsize</span>, <span class='no'>colors</span>, <span class='no'>ltys</span>, <span class='no'>pchs</span>, <span class='no'>devoff</span>, <span class='no'>lpos</span>)</pre>
     
-    <h2 class="hasAnchor" id="arguments"><a class="anchor" href="#arguments"></a> Arguments</h2>
+    <h2 class="hasAnchor" id="arguments"><a class="anchor" href="#arguments"></a>Arguments</h2>
     <table class="ref-arguments">
     <colgroup><col class="name" /><col class="desc" /></colgroup>
     <tr>
@@ -243,9 +258,7 @@
     <pre class="examples"><div class='input'><span class='fu'>data</span>(<span class='no'>antifoul</span>)
 <span class='no'>r</span> <span class='kw'>&lt;-</span> <span class='fu'>drfit</span>(<span class='no'>antifoul</span>)</div><div class='output co'>#&gt; <span class='message'></span>
 #&gt; <span class='message'>TBT: Fitting data...</span></div><div class='output co'>#&gt; <span class='message'>Waiting for profiling to be done...</span></div><div class='output co'>#&gt; <span class='message'></span>
-#&gt; <span class='message'>Zn Pyrithion: Fitting data...</span></div><div class='output co'>#&gt; <span class='message'>Waiting for profiling to be done...</span></div><span class='co'># NOT RUN {</span>
-<span class='fu'>drplot</span>(<span class='no'>r</span>,<span class='no'>antifoul</span>)
-<span class='co'># }</span></pre>
+#&gt; <span class='message'>Zn Pyrithion: Fitting data...</span></div><div class='output co'>#&gt; <span class='message'>Waiting for profiling to be done...</span></div><div class='input'><span class='fu'>drplot</span>(<span class='no'>r</span>,<span class='no'>antifoul</span>)</div><div class='img'><img src='drplot-1.png' alt='' width='700' height='433' /></div><div class='img'><img src='drplot-2.png' alt='' width='700' height='433' /></div></pre>
   </div>
   <div class="col-md-3 hidden-xs hidden-sm" id="sidebar">
     <h2>Contents</h2>
@@ -280,5 +293,8 @@
       </footer>
    </div>
 
+  
+
   </body>
 </html>
+
diff --git a/docs/reference/index.html b/docs/reference/index.html
index e3ecd24..2b1f884 100644
--- a/docs/reference/index.html
+++ b/docs/reference/index.html
@@ -21,13 +21,19 @@
 <!-- clipboard.js -->
 <script src="https://cdnjs.cloudflare.com/ajax/libs/clipboard.js/1.7.1/clipboard.min.js" integrity="sha384-cV+rhyOuRHc9Ub/91rihWcGmMmCXDeksTtCihMupQHSsi8GIIRDG0ThDc3HGQFJ3" crossorigin="anonymous"></script>
 
+<!-- sticky kit -->
+<script src="https://cdnjs.cloudflare.com/ajax/libs/sticky-kit/1.1.3/sticky-kit.min.js" integrity="sha256-c4Rlo1ZozqTPE2RLuvbusY3+SU1pQaJC0TjuhygMipw=" crossorigin="anonymous"></script>
+
 <!-- pkgdown -->
 <link href="../pkgdown.css" rel="stylesheet">
-<script src="../jquery.sticky-kit.min.js"></script>
 <script src="../pkgdown.js"></script>
-  
-  
+
+
+
 <meta property="og:title" content="Function reference" />
+
+
+
 <!-- mathjax -->
 <script src='https://mathjax.rstudio.com/latest/MathJax.js?config=TeX-AMS-MML_HTMLorMML'></script>
 
@@ -50,8 +56,12 @@
         <span class="icon-bar"></span>
         <span class="icon-bar"></span>
       </button>
-      <a class="navbar-brand" href="../index.html">drfit</a>
+      <span class="navbar-brand">
+        <a class="navbar-link" href="../index.html">drfit</a>
+        <span class="label label-default" data-toggle="tooltip" data-placement="bottom" title="Released package">0.7.1</span>
+      </span>
     </div>
+
     <div id="navbar" class="navbar-collapse collapse">
       <ul class="nav navbar-nav">
         <li>
@@ -68,6 +78,7 @@
       <ul class="nav navbar-nav navbar-right">
         
       </ul>
+      
     </div><!--/.nav-collapse -->
   </div><!--/.container -->
 </div><!--/.navbar -->
@@ -75,112 +86,108 @@
       
       </header>
 
-      <div class="row">
-  <div class="col-md-9">
+<div class="row">
+  <div class="contents col-md-9">
     <div class="page-header">
-      <h1>
-        Reference
-        <small>version&nbsp;0.7.1</small>
-      </h1>
+      <h1>Reference</h1>
     </div>
 
-    <div class="contents">
-      <table class="ref-index">
-
-      <colgroup>
-        <col class="alias" />
-        <col class="title" />
-      </colgroup>
-
-      <tbody>
-        <tr>
-          <th colspan="2">
-            <h2 id="section-all-functions" class="hasAnchor"><a href="#section-all-functions" class="anchor"></a>All functions</h2>
-            <p class="section-desc"></p>
-          </th>
-        </tr>
-        <tr>
-          <!--  -->
-          <td>
-            <p><code><a href="antifoul.html">data</a></code> </p>
-          </td>
-          <td><p>Dose-Response data for TBT and Zink Pyrithione in IPC-81 cells</p></td>
-        </tr><tr>
-          <!--  -->
-          <td>
-            <p><code><a href="checkcontrols.html">checkcontrols</a></code> </p>
-          </td>
-          <td><p>Check raw data from range of plates or experiments</p></td>
-        </tr><tr>
-          <!--  -->
-          <td>
-            <p><code><a href="checkexperiment.html">checkplate</a></code> <code><a href="checkexperiment.html">checkexperiment</a></code> </p>
-          </td>
-          <td><p>Check raw data from a specified experiment or microtiter plate</p></td>
-        </tr><tr>
-          <!--  -->
-          <td>
-            <p><code><a href="drcfit.html">drcfit</a></code> </p>
-          </td>
-          <td><p>Fit dose-response models using the drc package</p></td>
-        </tr><tr>
-          <!--  -->
-          <td>
-            <p><code><a href="drdata.html">drdata</a></code> </p>
-          </td>
-          <td><p>Get dose-response data via RODBC</p></td>
-        </tr><tr>
-          <!--  -->
-          <td>
-            <p><code><a href="drfit-package.html">drfit-package</a></code> </p>
-          </td>
-          <td><p>Dose-response data evaluation</p></td>
-        </tr><tr>
-          <!--  -->
-          <td>
-            <p><code><a href="drfit.html">drfit</a></code> </p>
-          </td>
-          <td><p>Fit dose-response models</p></td>
-        </tr><tr>
-          <!--  -->
-          <td>
-            <p><code><a href="drplot.html">drplot</a></code> </p>
-          </td>
-          <td><p>Plot dose-response models</p></td>
-        </tr><tr>
-          <!--  -->
-          <td>
-            <p><code><a href="IM1xIPC81.html">data</a></code> </p>
-          </td>
-          <td><p>Dose-Response data for 1-methyl-3-alkylimidazolium tetrafluoroborates in IPC-81 cells</p></td>
-        </tr><tr>
-          <!--  -->
-          <td>
-            <p><code><a href="IM1xVibrio.html">data</a></code> </p>
-          </td>
-          <td><p>Dose-Response data for 1-methyl-3-alkylimidazolium tetrafluoroborates in V. fischeri</p></td>
-        </tr><tr>
-          <!--  -->
-          <td>
-            <p><code><a href="linlogitf.html">linlogitf</a></code> </p>
-          </td>
-          <td><p>Linear-logistic function</p></td>
-        </tr><tr>
-          <!--  -->
-          <td>
-            <p><code><a href="pyrithione.html">data</a></code> </p>
-          </td>
-          <td><p>Cytotoxicity data for different pyrithionates and related species</p></td>
-        </tr><tr>
-          <!--  -->
-          <td>
-            <p><code><a href="XY.html">data</a></code> </p>
-          </td>
-          <td><p>Dose-Response data for two substances X and Y</p></td>
-        </tr>
-      </tbody>
-      </table>
-    </div>
+    <table class="ref-index">
+
+    <colgroup>
+      
+      <col class="alias" />
+      <col class="title" />
+    </colgroup>
+
+    <tbody>
+      <tr>
+        <th colspan="2">
+          <h2 id="section-all-functions" class="hasAnchor"><a href="#section-all-functions" class="anchor"></a>All functions</h2>
+          <p class="section-desc"></p>
+        </th>
+      </tr>
+      <tr>
+        
+        <td>
+          <p><code><a href="IM1xIPC81.html">IM1xIPC81</a></code> </p>
+        </td>
+        <td><p>Dose-Response data for 1-methyl-3-alkylimidazolium tetrafluoroborates in IPC-81 cells</p></td>
+      </tr><tr>
+        
+        <td>
+          <p><code><a href="IM1xVibrio.html">IM1xVibrio</a></code> </p>
+        </td>
+        <td><p>Dose-Response data for 1-methyl-3-alkylimidazolium tetrafluoroborates in V. fischeri</p></td>
+      </tr><tr>
+        
+        <td>
+          <p><code><a href="XY.html">XY</a></code> </p>
+        </td>
+        <td><p>Dose-Response data for two substances X and Y</p></td>
+      </tr><tr>
+        
+        <td>
+          <p><code><a href="antifoul.html">antifoul</a></code> </p>
+        </td>
+        <td><p>Dose-Response data for TBT and Zink Pyrithione in IPC-81 cells</p></td>
+      </tr><tr>
+        
+        <td>
+          <p><code><a href="checkcontrols.html">checkcontrols()</a></code> </p>
+        </td>
+        <td><p>Check raw data from range of plates or experiments</p></td>
+      </tr><tr>
+        
+        <td>
+          <p><code><a href="checkexperiment.html">checkplate()</a></code> <code><a href="checkexperiment.html">checkexperiment()</a></code> </p>
+        </td>
+        <td><p>Check raw data from a specified experiment or microtiter plate</p></td>
+      </tr><tr>
+        
+        <td>
+          <p><code><a href="drcfit.html">drcfit()</a></code> </p>
+        </td>
+        <td><p>Fit dose-response models using the drc package</p></td>
+      </tr><tr>
+        
+        <td>
+          <p><code><a href="drdata.html">drdata()</a></code> </p>
+        </td>
+        <td><p>Get dose-response data via RODBC</p></td>
+      </tr><tr>
+        
+        <td>
+          <p><code><a href="drfit-package.html">drfit-package</a></code> </p>
+        </td>
+        <td><p>Dose-response data evaluation</p></td>
+      </tr><tr>
+        
+        <td>
+          <p><code><a href="drfit.html">drfit()</a></code> </p>
+        </td>
+        <td><p>Fit dose-response models</p></td>
+      </tr><tr>
+        
+        <td>
+          <p><code><a href="drplot.html">drplot()</a></code> </p>
+        </td>
+        <td><p>Plot dose-response models</p></td>
+      </tr><tr>
+        
+        <td>
+          <p><code><a href="linlogitf.html">linlogitf()</a></code> </p>
+        </td>
+        <td><p>Linear-logistic function</p></td>
+      </tr><tr>
+        
+        <td>
+          <p><code><a href="pyrithione.html">pyrithione</a></code> </p>
+        </td>
+        <td><p>Cytotoxicity data for different pyrithionates and related species</p></td>
+      </tr>
+    </tbody>
+    </table>
   </div>
 
   <div class="col-md-3 hidden-xs hidden-sm" id="sidebar">
@@ -203,5 +210,8 @@
       </footer>
    </div>
 
+  
+
   </body>
 </html>
+
diff --git a/docs/reference/linlogitf.html b/docs/reference/linlogitf.html
index deed92a..1dddf50 100644
--- a/docs/reference/linlogitf.html
+++ b/docs/reference/linlogitf.html
@@ -21,17 +21,23 @@
 <!-- clipboard.js -->
 <script src="https://cdnjs.cloudflare.com/ajax/libs/clipboard.js/1.7.1/clipboard.min.js" integrity="sha384-cV+rhyOuRHc9Ub/91rihWcGmMmCXDeksTtCihMupQHSsi8GIIRDG0ThDc3HGQFJ3" crossorigin="anonymous"></script>
 
+<!-- sticky kit -->
+<script src="https://cdnjs.cloudflare.com/ajax/libs/sticky-kit/1.1.3/sticky-kit.min.js" integrity="sha256-c4Rlo1ZozqTPE2RLuvbusY3+SU1pQaJC0TjuhygMipw=" crossorigin="anonymous"></script>
+
 <!-- pkgdown -->
 <link href="../pkgdown.css" rel="stylesheet">
-<script src="../jquery.sticky-kit.min.js"></script>
 <script src="../pkgdown.js"></script>
-  
-  
+
+
+
 <meta property="og:title" content="Linear-logistic function — linlogitf" />
 
 <meta property="og:description" content="Helper function describing a special type of dose-response curves, showing a stimulus
   at subtoxic doses." />
 <meta name="twitter:card" content="summary" />
+
+
+
 <!-- mathjax -->
 <script src='https://mathjax.rstudio.com/latest/MathJax.js?config=TeX-AMS-MML_HTMLorMML'></script>
 
@@ -54,8 +60,12 @@
         <span class="icon-bar"></span>
         <span class="icon-bar"></span>
       </button>
-      <a class="navbar-brand" href="../index.html">drfit</a>
+      <span class="navbar-brand">
+        <a class="navbar-link" href="../index.html">drfit</a>
+        <span class="label label-default" data-toggle="tooltip" data-placement="bottom" title="Released package">0.7.1</span>
+      </span>
     </div>
+
     <div id="navbar" class="navbar-collapse collapse">
       <ul class="nav navbar-nav">
         <li>
@@ -72,6 +82,7 @@
       <ul class="nav navbar-nav navbar-right">
         
       </ul>
+      
     </div><!--/.nav-collapse -->
   </div><!--/.container -->
 </div><!--/.navbar -->
@@ -79,20 +90,24 @@
       
       </header>
 
-      <div class="row">
+<div class="row">
   <div class="col-md-9 contents">
     <div class="page-header">
     <h1>Linear-logistic function</h1>
+    
+    <div class="hidden name"><code>linlogitf.Rd</code></div>
     </div>
 
+    <div class="ref-description">
     
     <p>Helper function describing a special type of dose-response curves, showing a stimulus
   at subtoxic doses.</p>
     
+    </div>
 
     <pre class="usage"><span class='fu'>linlogitf</span>(<span class='no'>x</span>,<span class='no'>k</span>,<span class='no'>f</span>,<span class='no'>mu</span>,<span class='no'>b</span>)</pre>
     
-    <h2 class="hasAnchor" id="arguments"><a class="anchor" href="#arguments"></a> Arguments</h2>
+    <h2 class="hasAnchor" id="arguments"><a class="anchor" href="#arguments"></a>Arguments</h2>
     <table class="ref-arguments">
     <colgroup><col class="name" /><col class="desc" /></colgroup>
     <tr>
@@ -159,5 +174,8 @@
       </footer>
    </div>
 
+  
+
   </body>
 </html>
+
diff --git a/docs/reference/pyrithione.html b/docs/reference/pyrithione.html
index d7b6ced..1488ecb 100644
--- a/docs/reference/pyrithione.html
+++ b/docs/reference/pyrithione.html
@@ -21,18 +21,24 @@
 <!-- clipboard.js -->
 <script src="https://cdnjs.cloudflare.com/ajax/libs/clipboard.js/1.7.1/clipboard.min.js" integrity="sha384-cV+rhyOuRHc9Ub/91rihWcGmMmCXDeksTtCihMupQHSsi8GIIRDG0ThDc3HGQFJ3" crossorigin="anonymous"></script>
 
+<!-- sticky kit -->
+<script src="https://cdnjs.cloudflare.com/ajax/libs/sticky-kit/1.1.3/sticky-kit.min.js" integrity="sha256-c4Rlo1ZozqTPE2RLuvbusY3+SU1pQaJC0TjuhygMipw=" crossorigin="anonymous"></script>
+
 <!-- pkgdown -->
 <link href="../pkgdown.css" rel="stylesheet">
-<script src="../jquery.sticky-kit.min.js"></script>
 <script src="../pkgdown.js"></script>
-  
-  
+
+
+
 <meta property="og:title" content="Cytotoxicity data for different pyrithionates and related species — pyrithione" />
 
 <meta property="og:description" content="This data shows the cytotoxicity of pyrithione salts as well as the free
  pyrithione, its oxidation product and some other related compounds to the
  IPC-81 cell line." />
 <meta name="twitter:card" content="summary" />
+
+
+
 <!-- mathjax -->
 <script src='https://mathjax.rstudio.com/latest/MathJax.js?config=TeX-AMS-MML_HTMLorMML'></script>
 
@@ -55,8 +61,12 @@
         <span class="icon-bar"></span>
         <span class="icon-bar"></span>
       </button>
-      <a class="navbar-brand" href="../index.html">drfit</a>
+      <span class="navbar-brand">
+        <a class="navbar-link" href="../index.html">drfit</a>
+        <span class="label label-default" data-toggle="tooltip" data-placement="bottom" title="Released package">0.7.1</span>
+      </span>
     </div>
+
     <div id="navbar" class="navbar-collapse collapse">
       <ul class="nav navbar-nav">
         <li>
@@ -73,6 +83,7 @@
       <ul class="nav navbar-nav navbar-right">
         
       </ul>
+      
     </div><!--/.nav-collapse -->
   </div><!--/.container -->
 </div><!--/.navbar -->
@@ -80,17 +91,21 @@
       
       </header>
 
-      <div class="row">
+<div class="row">
   <div class="col-md-9 contents">
     <div class="page-header">
     <h1>Cytotoxicity data for different pyrithionates and related species</h1>
+    
+    <div class="hidden name"><code>pyrithione.Rd</code></div>
     </div>
 
+    <div class="ref-description">
     
     <p>This data shows the cytotoxicity of pyrithione salts as well as the free
  pyrithione, its oxidation product and some other related compounds to the
  IPC-81 cell line.</p>
     
+    </div>
 
     <pre class="usage"><span class='fu'>data</span>(<span class='no'>pyrithione</span>)</pre>
         
@@ -138,5 +153,8 @@
       </footer>
    </div>
 
+  
+
   </body>
 </html>
+
diff --git a/man/drplot.Rd b/man/drplot.Rd
index 6b8a7bf..d8d7eb3 100644
--- a/man/drplot.Rd
+++ b/man/drplot.Rd
@@ -123,7 +123,7 @@
 \examples{
 data(antifoul)
 r <- drfit(antifoul)
-\dontrun{drplot(r,antifoul)}
+drplot(r,antifoul)
 }
 \note{There is a demo for each dataset that can be accessed by
   \code{demo(dataset)}}
author	Johannes Ranke <jranke@uni-bremen.de>	2018-06-06 02:11:57 +0200
committer	Johannes Ranke <jranke@uni-bremen.de>	2018-06-06 02:11:57 +0200
commit	23528ad9b4f07434b3249f1e48ade1e0d07528bf (patch)
tree	c9814c4b8bdbdda823e0d38012bb08bbc324ea9e
parent	16aadfc099f31741a127cf52f18253d44d88a86a (diff)