diff options
| author | ranke <ranke@d1b72e20-2ee0-0310-a1c4-ad5adbbefcdc> | 2006-05-03 22:53:31 +0000 |
|---|---|---|
| committer | ranke <ranke@d1b72e20-2ee0-0310-a1c4-ad5adbbefcdc> | 2006-05-03 22:53:31 +0000 |
| commit | 2cf977cb94fcf6e68b4a75cdf33a29a5308b9457 (patch) | |
| tree | c82b096ba83b4c19d5ec0b0a1012e0100ca867fb /tests/pyrithione.Rout.save | |
| parent | 8eea91d691ee60f0ce5bd3560f2e4b7e5820556a (diff) | |
Changed the way confidence intervals are being calculated. Now
the function confint.nls from the MASS package is being used,
after stumbling across the relevant paragraph of the MASS book.
git-svn-id: http://kriemhild.uft.uni-bremen.de/svn/drfit@76 d1b72e20-2ee0-0310-a1c4-ad5adbbefcdc
Diffstat (limited to 'tests/pyrithione.Rout.save')
| -rw-r--r-- | tests/pyrithione.Rout.save | 76 |
1 files changed, 46 insertions, 30 deletions
diff --git a/tests/pyrithione.Rout.save b/tests/pyrithione.Rout.save index fb11ca9..2a05dd8 100644 --- a/tests/pyrithione.Rout.save +++ b/tests/pyrithione.Rout.save @@ -16,70 +16,86 @@ Type 'demo()' for some demos, 'help()' for on-line help, or Type 'q()' to quit R. > library(drfit) +Loading required package: MASS Loading required package: RODBC > data(pyrithione) > rpyr <- drfit(pyrithione,linlogit=TRUE,linlogitWrong=c("MSPT","MSPHI")) Na Pyrithion: Fitting data... +Waiting for profiling to be done... +Error in prof$getProfile() : number of iterations exceeded maximum of 50 Pyridin: Fitting data... PyNO: Fitting data... (PT)2: Fitting data... +Waiting for profiling to be done... MSO2P: Fitting data... MSPHI: Fitting data... +Waiting for profiling to be done... PyS: Fitting data... Error in nls(response ~ linlogitf(dose, 1, f, logED50, b), data = tmp, : step factor 0.000488281 reduced below 'minFactor' of 0.000976562 +Waiting for profiling to be done... +Error in numericDeriv(form[[3]], names(ind), env) : + Missing value or an infinity produced when evaluating the model +In addition: Warning message: +NaNs produced in: pnorm(q, mean, sd, lower.tail, log.p) Zn Pyrithion: Fitting data... +Waiting for profiling to be done... Cu Pyrithion: Fitting data... +Waiting for profiling to be done... Fe Pyrithion: Fitting data... +Waiting for profiling to be done... (PyS)2: Fitting data... Error in nls(response ~ linlogitf(dose, 1, f, logED50, b), data = tmp, : singular gradient +Waiting for profiling to be done... MSPT: Fitting data... +Waiting for profiling to be done... TBT: Fitting data... +Waiting for profiling to be done... NaJ: Fitting data... > rpyr - Substance ndl n lld lhd mtype logED50 std unit -1 Na Pyrithion 20 108 -2.107210 2.00000 linlogit -0.3461318 0.04237833 然 -2 Pyridin 19 161 0.591760 3.69897 inactive NA NA 然 -3 PyNO 19 81 0.591760 3.69897 no fit NA NA 然 -4 (PT)2 19 81 -2.408240 2.00000 linlogit -0.4197031 0.05030460 然 -5 MSO2P 28 108 -1.709271 3.69897 inactive NA NA 然 -6 MSPHI 19 81 0.591760 3.69897 probit 3.6625025 0.06724673 然 -7 PyS 18 80 -0.408240 3.00000 probit 2.6817944 0.02031252 然 -8 Zn Pyrithion 27 81 -2.107210 2.00000 linlogit -0.4132885 0.06234927 然 -9 Cu Pyrithion 19 79 -2.408240 2.00000 linlogit -0.3074717 0.07918130 然 -10 Fe Pyrithion 19 81 -2.408240 2.00000 linlogit -0.3534572 0.07263386 然 -11 (PyS)2 20 81 -0.408240 3.00000 probit 1.7840499 0.05230663 然 -12 MSPT 18 108 -0.408240 3.00000 probit 2.1384811 0.03379904 然 -13 TBT 38 135 -2.709271 2.39794 linlogit -0.1580954 0.05474371 然 -14 NaJ 10 108 0.591760 3.30103 inactive NA NA 然 - sigma a b c -1 0.20857751 -0.3461318 2.1188272 -0.26698979 -2 NA NA NA NA -3 0.09188853 NA NA NA -4 0.20509070 -0.4197031 1.8466994 -0.51508088 -5 NA NA NA NA -6 0.12943273 3.6625025 0.4387540 NA -7 0.13401920 2.6817944 0.1250523 NA -8 0.22877916 -0.4132885 1.7424846 0.61078660 -9 0.24494451 -0.3074717 1.0150649 -0.04897422 -10 0.23383185 -0.3534572 1.1823558 0.02510613 -11 0.23298721 1.7840499 0.4098018 NA -12 0.22881257 2.1384811 0.2112625 NA -13 0.19264079 -0.1580954 1.0406576 -0.02416104 -14 NA NA NA NA + Substance ndl n lld lhd mtype logED50 2.5% +1 Na Pyrithion 20 108 -2.107210 2.00000 linlogit -0.3461318 NA +2 Pyridin 19 161 0.591760 3.69897 inactive NA NA +3 PyNO 19 81 0.591760 3.69897 no fit NA NA +4 (PT)2 19 81 -2.408240 2.00000 linlogit -0.4197042 -0.5326102 +5 MSO2P 28 108 -1.709271 3.69897 inactive NA NA +6 MSPHI 19 81 0.591760 3.69897 probit 3.6625025 3.5548278 +7 PyS 18 80 -0.408240 3.00000 probit 2.6817944 NA +8 Zn Pyrithion 27 81 -2.107210 2.00000 linlogit -0.4132886 -0.5293327 +9 Cu Pyrithion 19 79 -2.408240 2.00000 linlogit -0.3074717 -0.4753489 +10 Fe Pyrithion 19 81 -2.408240 2.00000 linlogit -0.3534573 -0.5003829 +11 (PyS)2 20 81 -0.408240 3.00000 probit 1.7840499 1.6726792 +12 MSPT 18 108 -0.408240 3.00000 probit 2.1384811 2.0709306 +13 TBT 38 135 -2.709271 2.39794 linlogit -0.1580954 -0.2602139 +14 NaJ 10 108 0.591760 3.30103 inactive NA NA + 97.5% unit sigma a b c +1 NA 然 0.20857751 -0.3461318 2.1188275 -0.26698926 +2 NA 然 NA NA NA NA +3 NA 然 0.09188853 NA NA NA +4 NA 然 0.20509070 -0.4197042 1.8467290 -0.51505615 +5 NA 然 NA NA NA NA +6 3.88053203 然 0.12943273 3.6625025 0.4387540 NA +7 NA 然 0.13401920 2.6817944 0.1250523 NA +8 -0.29979846 然 0.22877916 -0.4132886 1.7424848 0.61079006 +9 -0.15442805 然 0.24494451 -0.3074717 1.0150650 -0.04897413 +10 -0.21459555 然 0.23383185 -0.3534573 1.1823561 0.02510663 +11 1.88824519 然 0.23298721 1.7840499 0.4098018 NA +12 2.20511512 然 0.22881257 2.1384811 0.2112625 NA +13 -0.05045493 然 0.19264079 -0.1580954 1.0406577 -0.02416082 +14 NA 然 NA NA NA NA > |