diff options
Diffstat (limited to 'man')
| -rw-r--r-- | man/checkexperiment.Rd | 13 | ||||
| -rw-r--r-- | man/checksubstance.Rd | 13 | ||||
| -rw-r--r-- | man/drplot.Rd | 13 |
3 files changed, 30 insertions, 9 deletions
diff --git a/man/checkexperiment.Rd b/man/checkexperiment.Rd index 56db90c..1162d1b 100644 --- a/man/checkexperiment.Rd +++ b/man/checkexperiment.Rd @@ -7,16 +7,19 @@ specified database, box plot controls, and plot the dose-response data. } \usage{ - checkplate(id,db="cytotox") - checkexperiment(id,db="ecotox") + checkplate(id, db = "cytotox") + checkexperiment(id, db = "ecotox", endpoint = "\%") } \arguments{ \item{id}{ The id of the experiment or the plate identifying it within the database.} \item{db}{ - The database to be used. Currently, the microtiter plate databases - "cytotox", "enzymes" of the UFT Department of Bioorganic Chemistry are - supported, as well as the database of ecotoxicity experiments "ecotox".} + The database to be used. Currently, the microtiter plate databases + "cytotox", "enzymes" of the UFT Department of Bioorganic Chemistry are + supported, as well as the database of ecotoxicity experiments "ecotox".} + \item{endpoint}{ + The endpoint that should be used for selecting the data. Only important if + the database "ecotox" is used. Defaults to "\%".} } \value{ The function lists a report and shows two graphs side by side. diff --git a/man/checksubstance.Rd b/man/checksubstance.Rd index f5340fe..387785f 100644 --- a/man/checksubstance.Rd +++ b/man/checksubstance.Rd @@ -6,7 +6,10 @@ the data. } \usage{ - checksubstance(substance,db="cytotox",experimentator="\%",celltype="\%",enzymetype="\%",whereClause="1",ok="\%") + checksubstance(substance, db = "cytotox", experimentator = "\%", + celltype = "\%", enzymetype = "\%", organism = "\%", + endpoint = "\%", + whereClause = "1", ok = "\%") } \arguments{ \item{substance}{ @@ -25,9 +28,15 @@ \item{enzymetype}{ Currently, only data for AChE, GR and GST are supported. The default value is "\%", i.e. data for any enzyme type will be displayed.} + \item{organism}{ + The latin name of the tested organism, if the ecotox db was selected. The + default value is "\%", i.e. data for any organism will be displayed.} + \item{endpoint}{ + The endpoint that should be used for selecting the data. Only important if + the database "ecotox" is used. Defaults to "\%".} \item{whereClause}{ With this argument, additional conditions for the SQL query can be set, - e.g. "where plate != 710". The default is 1 (in SQL syntax this means TRUE).} + e.g. "plate != 710". The default is 1 (in SQL syntax this means TRUE).} \item{ok}{ With the default value "\%", all data in the database is retrieved for the specified substance.} diff --git a/man/drplot.Rd b/man/drplot.Rd index bff2388..7924be2 100644 --- a/man/drplot.Rd +++ b/man/drplot.Rd @@ -7,8 +7,8 @@ } \usage{ drplot(drresults, data, dtype, alpha, ctype, path, - fileprefix, overlay, xlim, ylim, postscript, pdf, png, bw, - pointsize, colors, devoff, lpos) + fileprefix, overlay, xlim, ylim, xlab, ylab, postscript, pdf, png, bw, + pointsize, colors, ltys, devoff, lpos) } \arguments{ \item{drresults}{ @@ -57,6 +57,12 @@ \item{ylim}{ The plot limits (min,max) on the response axis. } + \item{xlab}{ + The axis title for the x axis. Defaults to "Concentration in" \code{unit}. + } + \item{ylab}{ + The axis title for the y axis. Defaults to "Normalized response". + } \item{postscript}{ If TRUE, (a) postscript graph(s) will be created. Otherwise, and if the pdf and png arguments are also FALSE, graphics will be @@ -82,6 +88,9 @@ \item{colors}{ This is a vector of colors, defaulting to 1:8, used for plotting the data. } + \item{ltys}{ + This is a vector of line types for the dose-response models, defaulting to 1:8. + } \item{lpos}{ An optional argument defaulting to "topright" specifying the position of the legend by being passed to the legend function. See the help for the |