diff options
Diffstat (limited to 'man')
| -rw-r--r-- | man/drfit.Rd | 10 | ||||
| -rw-r--r-- | man/drplot.Rd | 32 | ||||
| -rw-r--r-- | man/linearlogisf.Rd | 6 |
3 files changed, 25 insertions, 23 deletions
diff --git a/man/drfit.Rd b/man/drfit.Rd index 30f3fd4..ddcf80b 100644 --- a/man/drfit.Rd +++ b/man/drfit.Rd @@ -7,7 +7,7 @@ } \usage{ drfit(data, startlogEC50 = NA, chooseone = TRUE, lognorm = TRUE, logis = FALSE, - linearlogis = FALSE, b0 = 2, f0 = 0) + linearlogis = FALSE, linearlogisWrong = NA, b0 = 2, f0 = 0) } \arguments{ \item{data}{ @@ -30,8 +30,12 @@ A boolean defining if cumulative densitiy curves of logistic distributions are fitted to the data. Default is FALSE.} \item{linearlogis}{ - A boolean defining if the linear-logistic function as defined by van Ewijk and Hoekstra - 1993 is fitted to the data. Default is FALSE.} + A boolean defining if the linear-logistic function + \code{\link{linearlogisf}} as defined by van Ewijk and Hoekstra 1993 is + fitted to the data. Default is FALSE.} + \item{linearlogisWrong}{ + An optional vector containing the names of the substances for which the + linearlogis function produces a wrong fit.} \item{chooseone}{ If TRUE (default), the models are tried in the order linearlogis, logis and lognorm, and the first model that produces a valid fit is used. Usually this will be the one diff --git a/man/drplot.Rd b/man/drplot.Rd index 418de15..784b65b 100644 --- a/man/drplot.Rd +++ b/man/drplot.Rd @@ -7,7 +7,7 @@ } \usage{ drplot(drresults, data, dtype, alpha, path, fileprefix, overlay, - postscript, color, datacolors, fitcolors) + postscript, png, bw, colors) } \arguments{ \item{drresults}{ @@ -46,23 +46,21 @@ will all be put into the last graph in this case. } \item{postscript}{ - If TRUE, (a) postscript graph(s) will be created. Otherwise, graphics will be + If TRUE, (a) postscript graph(s) will be created. Otherwise, and if + the png argument is also FALSE, graphics will be displayed with a screen graphics device. } - \item{color}{ - If TRUE, a sensible selection of colors will be attempted. If false, everything - will be drawn in black + \item{png}{ + If TRUE, (a) png graph(s) will be created. Otherwise, and if the + postscript argument is also FALSE, graphics will be displayed with a + screen graphics device. } - \item{datacolors}{ - This is a vector of colors, defaulting to 1:8, used for plotting the data. + \item{bw}{ + A boolean deciding if the plots will be black and white or not. Default + is TRUE. } - \item{fitcolors}{ - Here you can specify a palette for the colors of the dose-response fits. The - default value is "default", which produces the default palette, if the - number of fits to be plotted is 8 or less. Otherwise, rainbow colors - will be plotted. Unless there is more than one fit per substance to be plotted, - or the number of fits is larger than 8, the fitcolors will match the - datacolors. + \item{colors}{ + This is a vector of colors, defaulting to 1:8, used for plotting the data. } } \value{ @@ -73,9 +71,9 @@ } \note{ - Turn off the colors if you don't like them and don't want to fiddle with - them. Treatment of legends is quite bad. Be sure all devices are closed - (e.g. by calling \code{dev.off()}) before calling \code{drplot} again. + Treatment of legends is not really well solved. Be sure all devices are + closed (e.g. by calling \code{dev.off()}) before calling \code{drplot} + again after a failure. } \examples{ data(antifoul) diff --git a/man/linearlogisf.Rd b/man/linearlogisf.Rd index d49dc9a..1ebe8be 100644 --- a/man/linearlogisf.Rd +++ b/man/linearlogisf.Rd @@ -23,9 +23,9 @@ \value{ The response at dose x. } -\examples{ - -} +\references{ + van Ewijk, P. H. and Hoekstra, J. A. (1993) \emph{Ecotox Environ Safety} + \bold{25} 25-32} \author{ Johannes Ranke \email{jranke@uni-bremen.de} |