aboutsummaryrefslogtreecommitdiff
path: root/man
diff options
context:
space:
mode:
Diffstat (limited to 'man')
-rw-r--r--man/checksubstance.Rd45
-rw-r--r--man/linearlogisf.Rd36
2 files changed, 81 insertions, 0 deletions
diff --git a/man/checksubstance.Rd b/man/checksubstance.Rd
new file mode 100644
index 0000000..e9915e7
--- /dev/null
+++ b/man/checksubstance.Rd
@@ -0,0 +1,45 @@
+\name{checksubstance}
+\alias{checksubstance}
+\title{Check raw data for a specified substance}
+\description{
+ Report metadata for a specified substance from a specified database, and plot
+ the data.
+}
+\usage{
+ checksubstance(substance,db="cytotox",experimentator="%",celltype="%",whereClause="1",ok="%")
+}
+\arguments{
+ \item{substance}{
+ The name of the substance identifying it within the database.}
+ \item{db}{
+ The database to be used. Currently, the databases "cytotox" and "enzymes"
+ of the UFT Department of Bioorganic Chemistry are supported (default is
+ "cytotox").}
+ \item{experimentator}{
+ The name of the experimentator whose data is to be used. Default is "\%", which
+ means that data from all experimentators are shown.}
+ \item{celltype}{
+ Currently, only data for IPC-81, C6, NB4, HeLa, Jurkat and U937 are supported.
+ Default is "\%", i.e. any cell type.}
+ \item{enzymetype}{
+ Currently, only data for AChE, GR and GST are supported.}
+ \item{whereClause}{
+ With this argument, additional conditions for the SQL query can be set,
+ e.g. "where plate != 710". The default is 1 (in SQL syntax this means TRUE).}
+ \item{ok}{
+ With the default value "\%", all data in the database is retrieved for the
+ specified substance.}
+}
+\value{
+ The function lists a report and shows one graph.
+}
+\examples{
+# Check substance IM14 BF4 in the cytotox database
+\dontrun{checksubstance("IM14 BF4")}
+}
+\author{
+ Johannes Ranke
+ \email{jranke@uni-bremen.de}
+ \url{http://www.uft.uni-bremen.de/chemie/ranke}
+}
+\keyword{database}
diff --git a/man/linearlogisf.Rd b/man/linearlogisf.Rd
new file mode 100644
index 0000000..d49dc9a
--- /dev/null
+++ b/man/linearlogisf.Rd
@@ -0,0 +1,36 @@
+\name{linearlogisf}
+\alias{linearlogisf}
+\title{Linear-logistic function}
+\description{
+ Helper function describing a special type of dose-response curves, showing a stimulus
+ at subtoxic doses.
+}
+\usage{
+ linearlogisf(x,k,f,mu,b)
+}
+\arguments{
+ \item{x}{
+ In this context, the x variable is the dose.}
+ \item{k}{
+ In the drfit functions, k is set to 1.}
+ \item{f}{
+ One of the parameters describing the curve shape.}
+ \item{mu}{
+ The parameter describing the location of the curve (log EC50).}
+ \item{b}{
+ One of the parameters describing the curve shape.}
+}
+\value{
+ The response at dose x.
+}
+\examples{
+
+}
+\author{
+ Johannes Ranke
+ \email{jranke@uni-bremen.de}
+ \url{http://www.uft.uni-bremen.de/chemie/ranke}
+}
+\keyword{models}
+\keyword{regression}
+\keyword{nonlinear}

Contact - Imprint