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-rw-r--r--man/drfit.Rd10
-rw-r--r--man/drplot.Rd32
-rw-r--r--man/linearlogisf.Rd6
3 files changed, 25 insertions, 23 deletions
diff --git a/man/drfit.Rd b/man/drfit.Rd
index 30f3fd4..ddcf80b 100644
--- a/man/drfit.Rd
+++ b/man/drfit.Rd
@@ -7,7 +7,7 @@
}
\usage{
drfit(data, startlogEC50 = NA, chooseone = TRUE, lognorm = TRUE, logis = FALSE,
- linearlogis = FALSE, b0 = 2, f0 = 0)
+ linearlogis = FALSE, linearlogisWrong = NA, b0 = 2, f0 = 0)
}
\arguments{
\item{data}{
@@ -30,8 +30,12 @@
A boolean defining if cumulative densitiy curves of logistic distributions
are fitted to the data. Default is FALSE.}
\item{linearlogis}{
- A boolean defining if the linear-logistic function as defined by van Ewijk and Hoekstra
- 1993 is fitted to the data. Default is FALSE.}
+ A boolean defining if the linear-logistic function
+ \code{\link{linearlogisf}} as defined by van Ewijk and Hoekstra 1993 is
+ fitted to the data. Default is FALSE.}
+ \item{linearlogisWrong}{
+ An optional vector containing the names of the substances for which the
+ linearlogis function produces a wrong fit.}
\item{chooseone}{
If TRUE (default), the models are tried in the order linearlogis, logis and lognorm,
and the first model that produces a valid fit is used. Usually this will be the one
diff --git a/man/drplot.Rd b/man/drplot.Rd
index 418de15..784b65b 100644
--- a/man/drplot.Rd
+++ b/man/drplot.Rd
@@ -7,7 +7,7 @@
}
\usage{
drplot(drresults, data, dtype, alpha, path, fileprefix, overlay,
- postscript, color, datacolors, fitcolors)
+ postscript, png, bw, colors)
}
\arguments{
\item{drresults}{
@@ -46,23 +46,21 @@
will all be put into the last graph in this case.
}
\item{postscript}{
- If TRUE, (a) postscript graph(s) will be created. Otherwise, graphics will be
+ If TRUE, (a) postscript graph(s) will be created. Otherwise, and if
+ the png argument is also FALSE, graphics will be
displayed with a screen graphics device.
}
- \item{color}{
- If TRUE, a sensible selection of colors will be attempted. If false, everything
- will be drawn in black
+ \item{png}{
+ If TRUE, (a) png graph(s) will be created. Otherwise, and if the
+ postscript argument is also FALSE, graphics will be displayed with a
+ screen graphics device.
}
- \item{datacolors}{
- This is a vector of colors, defaulting to 1:8, used for plotting the data.
+ \item{bw}{
+ A boolean deciding if the plots will be black and white or not. Default
+ is TRUE.
}
- \item{fitcolors}{
- Here you can specify a palette for the colors of the dose-response fits. The
- default value is "default", which produces the default palette, if the
- number of fits to be plotted is 8 or less. Otherwise, rainbow colors
- will be plotted. Unless there is more than one fit per substance to be plotted,
- or the number of fits is larger than 8, the fitcolors will match the
- datacolors.
+ \item{colors}{
+ This is a vector of colors, defaulting to 1:8, used for plotting the data.
}
}
\value{
@@ -73,9 +71,9 @@
}
\note{
- Turn off the colors if you don't like them and don't want to fiddle with
- them. Treatment of legends is quite bad. Be sure all devices are closed
- (e.g. by calling \code{dev.off()}) before calling \code{drplot} again.
+ Treatment of legends is not really well solved. Be sure all devices are
+ closed (e.g. by calling \code{dev.off()}) before calling \code{drplot}
+ again after a failure.
}
\examples{
data(antifoul)
diff --git a/man/linearlogisf.Rd b/man/linearlogisf.Rd
index d49dc9a..1ebe8be 100644
--- a/man/linearlogisf.Rd
+++ b/man/linearlogisf.Rd
@@ -23,9 +23,9 @@
\value{
The response at dose x.
}
-\examples{
-
-}
+\references{
+ van Ewijk, P. H. and Hoekstra, J. A. (1993) \emph{Ecotox Environ Safety}
+ \bold{25} 25-32}
\author{
Johannes Ranke
\email{jranke@uni-bremen.de}

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