From 91c7d76441b309e6b3b38d00e869ad1cea6e5d0e Mon Sep 17 00:00:00 2001 From: "(no author)" <(no author)@d1b72e20-2ee0-0310-a1c4-ad5adbbefcdc> Date: Wed, 8 Sep 2004 12:37:23 +0000 Subject: I built the windows binary package, and thus the compiled help files are updated. git-svn-id: http://kriemhild.uft.uni-bremen.de/svn/drfit@6 d1b72e20-2ee0-0310-a1c4-ad5adbbefcdc --- chm/00Index.html | 2 ++ chm/antifoul.html | 4 ++-- chm/checkplate.html | 68 ++++++++++++++++++++++++++++++++++++++++++++++++++++ chm/drdata.html | 9 +++---- chm/drfit.chm | Bin 22081 -> 30187 bytes chm/drfit.hhp | 1 + chm/drfit.html | 6 ++--- chm/drfit.toc | 8 +++++++ chm/drplot.html | 22 +++++++++++------ 9 files changed, 104 insertions(+), 16 deletions(-) create mode 100755 chm/checkplate.html diff --git a/chm/00Index.html b/chm/00Index.html index 9958f5e..db1b1cd 100644 --- a/chm/00Index.html +++ b/chm/00Index.html @@ -14,6 +14,8 @@ + + diff --git a/chm/antifoul.html b/chm/antifoul.html index 12ba527..810c5e9 100644 --- a/chm/antifoul.html +++ b/chm/antifoul.html @@ -24,14 +24,14 @@ February 25, 2004

Usage

-
data(rivers)
+
data(antifoul)

Format

A dataframe containing 135 and 81 data points for concentrations and responses -for TBT and Zink Pyrithione, respecitively. Additional data from the database is +for TBT and Zink Pyrithione, respectively. Additional data from the database is also present.

diff --git a/chm/checkplate.html b/chm/checkplate.html new file mode 100755 index 0000000..d545656 --- /dev/null +++ b/chm/checkplate.html @@ -0,0 +1,68 @@ +Check raw data from a specified microtiter plate + + + + +
antifoul Dose-Response data for TBT and Zink Pyrithione in IPC-81 cells
checkplateCheck raw data from a specified microtiter plate
drdata Get dose-response data
drfit
checkplate(drfit)R Documentation
+ + + + + +

Check raw data from a specified microtiter plate

+ + +

Description

+ +

+Report metadata from a specified microtiter plate from a specified database, box +plot positive and negative (blind) controls, and show the response data on the +plate. +

+ + +

Usage

+ +
+  checkplate(plate,db="cytotox")
+
+ + +

Arguments

+ + + + + + +
plate +The number of the plate identifying it within the database.
db +The database to be used. Currently only "cytotox" of the UFT Department of +Bioorganic Chemistry is supported.
+ +

Value

+ +

+The function lists a report and shows two graphs.

+ +

Author(s)

+ +

+Johannes Ranke +jranke@uni-bremen.de +http://www.uft.uni-bremen.de/chemie/ranke +

+ + +

Examples

+ +
+# Check plate number 1 in the cytotox database
+## Not run: data <- checkplate(1)
+
+ + + +
[Package Contents]
+ + diff --git a/chm/drdata.html b/chm/drdata.html index 7dd4a2b..a2ef9d9 100644 --- a/chm/drdata.html +++ b/chm/drdata.html @@ -60,10 +60,11 @@ order to additionally retrieve data which has not yet been checked.

The function is currently only used for retrieving data from the mysql database "cytotox" of the UFT Department of Bioorganic Chemistry. -Additionally to the installation of the RODBC package, it is required to set -up a ODBC data source with the name "cytotox", using an ODBC driver for mysql, -probably myODBC. Then, under Unix, you can use iodbc or unixodbc for setting -up the respective data source with data source name (DSN) "cytotox". For my +Access to this database is limited to UFT staff. Additionally to the +installation of the RODBC package, it is required to set up a ODBC data +source with the name "cytotox", using an ODBC driver for mysql, probably +myODBC. Then, under Unix, you can use iodbc or unixodbc for setting up the +respective data source with data source name (DSN) "cytotox". For my setting using unixodbc, I am using the file ‘/etc/odbcinst.ini’ containing: diff --git a/chm/drfit.chm b/chm/drfit.chm index 420ddab..ddded13 100644 Binary files a/chm/drfit.chm and b/chm/drfit.chm differ diff --git a/chm/drfit.hhp b/chm/drfit.hhp index f7e719a..40a9b74 100644 --- a/chm/drfit.hhp +++ b/chm/drfit.hhp @@ -12,6 +12,7 @@ Full text search stop list file=..\..\..\gnuwin32\help\R.stp [FILES] 00Index.html antifoul.html +checkplate.html drdata.html drfit.html drplot.html diff --git a/chm/drfit.html b/chm/drfit.html index 0c67eae..23dd70f 100644 --- a/chm/drfit.html +++ b/chm/drfit.html @@ -87,9 +87,9 @@ Johannes Ranke

Examples

-## Not run: data(antifoul)
-## Not run: r <- drfit(antifoul)
-## Not run: format(r,digits=2)
+data(antifoul)
+r <- drfit(antifoul)
+format(r,digits=2)
diff --git a/chm/drfit.toc b/chm/drfit.toc index ceaaa27..e80cc53 100644 --- a/chm/drfit.toc +++ b/chm/drfit.toc @@ -14,6 +14,10 @@
  • + + + +
  • @@ -31,6 +35,10 @@
    • +You will get plots of data and/or the fitted dose-response curves, on the +screen and/or as postscript files, depending on the parameters. +
    results -A data frame containing at least one line for each substance. If the data did not -show a mean response < 0.5 at the highest dose level, the modeltype is set to "none". -Every successful fit is reported in one line. Parameters of the fitted curves are only -reported if the fitted EC50 is not higher than the highest dose.
    +

    Note

    + +

    +Turn off the colors if you don't like them and don't want to fiddle with +them. Treatment of legends is quite bad. Be sure all devices are closed +(e.g. by calling dev.off()) before calling drplot again. +

    + +

    Author(s)

    @@ -119,9 +127,9 @@ Johannes Ranke

    Examples

    -## Not run: data(antifoul)
-## Not run: r <- drfit(antifoul)
-## Not run: format(r,digits=2)
+data(antifoul)
+r <- drfit(antifoul)
+## Not run: drplot(r,antifoul)
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