From 699448335d6fc5668b569577cb38a628c258eaec Mon Sep 17 00:00:00 2001 From: ranke Date: Wed, 21 Dec 2005 15:33:22 +0000 Subject: Changed the terminology from EC50 to ED50 reflecting that the package is meant for dose-response analysis in general and not only for concentration-response analysis. This is the first revision that has been prepared with the knowledge of the existence of the drc package for dose-response curve analysis. git-svn-id: http://kriemhild.uft.uni-bremen.de/svn/drfit@48 d1b72e20-2ee0-0310-a1c4-ad5adbbefcdc --- chm/drdata.html | 147 -------------------------------------------------------- 1 file changed, 147 deletions(-) delete mode 100644 chm/drdata.html (limited to 'chm/drdata.html') diff --git a/chm/drdata.html b/chm/drdata.html deleted file mode 100644 index a2ef9d9..0000000 --- a/chm/drdata.html +++ /dev/null @@ -1,147 +0,0 @@ -Get dose-response data - - - - -
drdata(drfit)R Documentation
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Get dose-response data

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Description

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-Get dose-response data from a remote mysql server -

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Usage

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-  drdata(substances, experimentator = "%", db = "cytotox", celltype = "IPC-81", 
-    whereClause = "1", ok = "'ok'")
-
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Arguments

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substances -A string or an array of strings with the substance names for -which dose-response data is to be retrieved.
experimentator -The name of the experimentator whose data is to be used.
db -The database to be used. Currently only "cytotox" of the UFT Department of -Bioorganic Chemistry is supported.
celltype -Currently, only data for IPC-81, C6, NB4, HeLa, Jurkat and U937 are supported.
whereClause -With this argument, additional conditions for the SQL query can be set, -e.g. "where plate != 710". The default is 1 (in SQL syntax this means TRUE).
ok -With the default value "'ok'", only data that has been checked and set to "ok" -in the database is retrieved. Another sensible argument would be "'ok','?'", in -order to additionally retrieve data which has not yet been checked.
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Details

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-The function is currently only used for retrieving data from the -mysql database "cytotox" of the UFT Department of Bioorganic Chemistry. -Access to this database is limited to UFT staff. Additionally to the -installation of the RODBC package, it is required to set up a ODBC data -source with the name "cytotox", using an ODBC driver for mysql, probably -myODBC. Then, under Unix, you can use iodbc or unixodbc for setting up the -respective data source with data source name (DSN) "cytotox". For my -setting using unixodbc, I am using the file ‘/etc/odbcinst.ini’ -containing: - - - - - - - - - - - - - -
[MySQL]
Description = MySQL driver for ODBC
Driver = /usr/local/lib/libmyodbc.so
Setup = /usr/lib/odbc/libodbcmyS.so
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-and the file ‘/etc/odbc.ini’ containing: - - - - - - - - - - - - - - - - - - - - - - - - - -
[cytotox]
Description = Cytotoxicity database of the department of bioorganic chemistry, UFT Bremen
Driver = MySQL
Trace = Yes
TraceFile = /tmp/odbc.log
Database = cytotox
Server = eckehaat
Port = 3306
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Value

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data -A data frame with a factor describing the dose levels, the numeric dose levels -and a numeric column describing the response, as well as the entries for -plate, experimentator, performed (date of test performance), celltype, unit -(of the dose/concentration), and for the ok field in the database.
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Author(s)

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-Johannes Ranke -jranke@uni-bremen.de -http://www.uft.uni-bremen.de/chemie/ranke -

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Examples

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-# Get cytotoxicity data for Tributyltin and zinc pyrithione, tested with IPC-81 cells
-## Not run: data <- drdata(c("TBT","Zn Pyrithion"))
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[Package Contents]
- - -- cgit v1.2.1