From d04bac001217855b4e9a1490a35bef3325441b55 Mon Sep 17 00:00:00 2001 From: Johannes Ranke Date: Fri, 21 Jul 2023 08:24:12 +0200 Subject: Maintenance prompted by email from CRAN - Fix an improper use of 'packageVersion' - Update .Rbuildignore - Fix a link in the README - Static documentation rebuilt by pkgdown::build_site() --- docs/reference/IM1xIPC81.html | 285 ++++++++++++++++++------------------------ 1 file changed, 123 insertions(+), 162 deletions(-) (limited to 'docs/reference/IM1xIPC81.html') diff --git a/docs/reference/IM1xIPC81.html b/docs/reference/IM1xIPC81.html index bd9211c..2ae6a33 100644 --- a/docs/reference/IM1xIPC81.html +++ b/docs/reference/IM1xIPC81.html @@ -1,42 +1,5 @@ - - - - - - - -Dose-Response data for 1-methyl-3-alkylimidazolium tetrafluoroborates in IPC-81 cells — IM1xIPC81 • drfit - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -Dose-Response data for 1-methyl-3-alkylimidazolium tetrafluoroborates in IPC-81 cells — IM1xIPC81 • drfit - - - - - - - - - - - - - - + + -
-
- -
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+

Dose-Response data for 1-methyl-3-alkylimidazolium tetrafluoroborates in IPC-81 cells

@@ -127,115 +61,142 @@ shown in Figure 3 in Ranke et al. (2004).

- 
data(IM1xIPC81)
- - -

Format

+
+ 
data(IM1xIPC81)
+
+
+

Format

A dataframe containing the data as required for the - drfit function. An additional column contains + drfit function. An additional column contains the tested organism (name of the cell line).

-

Source

- +
+
+

Source

Ranke J, Mölter K, Stock F, Bottin-Weber U, Poczobutt J, Hoffmann J, Ondruschka B, Filser J, Jastorff B (2004) Biological effects of imidazolium ionic liquids with varying chain lenghts in acute Vibrio fischeri and WST-1 cell viability assays. Ecotoxicology and Environmental Safety 58(3) 396-404

+
-

Examples

- 
  rIM1xIPC81 <- drfit(IM1xIPC81, linlogit = TRUE, showED50 = TRUE, EDx = 10)
#> 
-#> IM13 BF4: Fitting data...
#> 
-#> IM14 BF4: Fitting data...
#> Warning: NaNs wurden erzeugt
#> 
-#> IM15 BF4: Fitting data...
#> 
-#> IM16 BF4: Fitting data...
#> 
-#> IM17 BF4: Fitting data...
#> Waiting for profiling to be done...
#> Warning: NaNs wurden erzeugt
#> 
-#> IM18 BF4: Fitting data...
#> Waiting for profiling to be done...
#> Warning: NaNs wurden erzeugt
#> 
-#> IM19 BF4: Fitting data...
#> Waiting for profiling to be done...
#> Warning: NaNs wurden erzeugt
#> 
-#> IM1-10 BF4: Fitting data...
#> Waiting for profiling to be done...

-  rIM1xIPC81.drc <- drcfit(IM1xIPC81, linlogit = TRUE, showED50 = TRUE, EDx = 10)
#> 
-#> IM13 BF4: Fitting data...
#> 
-#> IM14 BF4: Fitting data...
#> 
-#> IM15 BF4: Fitting data...
#> 
-#> IM16 BF4: Fitting data...
#> 
-#> IM17 BF4: Fitting data...
#> 
-#> IM18 BF4: Fitting data...
#> 
-#> IM19 BF4: Fitting data...
#> 
-#> IM1-10 BF4: Fitting data...

-  print(rIM1xIPC81,digits=4)
#>    Substance ndl   n     lld   lhd    mtype logED50  2.5%  97.5%   unit  sigma
-#> 1   IM13 BF4   9  81  0.5918 3.000 inactive      NA    NA     NA microM     NA
-#> 2   IM14 BF4  20 216 -0.0103 3.176   no fit      NA    NA     NA microM     NA
-#> 3   IM15 BF4   9 135  0.5918 3.000 inactive      NA    NA     NA microM     NA
-#> 4   IM16 BF4   9 108  0.5918 3.000 inactive      NA    NA     NA microM     NA
-#> 5   IM17 BF4   9  81  0.5918 3.000 linlogit  2.5786 2.506 2.6617 microM 0.2376
-#> 6   IM18 BF4   9 135  0.5918 3.000 linlogit  1.6806 1.623 1.7419 microM 0.2325
-#> 7   IM19 BF4   9  81  0.5918 3.000 linlogit  1.6496 1.598 1.7031 microM 0.1453
-#> 8 IM1-10 BF4  11 162 -0.0103 3.000 linlogit  0.7697 0.687 0.8544 microM 0.2988
-#>        a     b       c    ED50 ED50 2.5% ED50 97.5%   EDx10
-#> 1     NA    NA      NA      NA        NA         NA      NA
-#> 2     NA    NA      NA      NA        NA         NA      NA
-#> 3     NA    NA      NA      NA        NA         NA      NA
-#> 4     NA    NA      NA      NA        NA         NA      NA
-#> 5 2.5786 2.300 0.01468 378.941   320.424    458.918 230.782
-#> 6 1.6806 2.237 0.05719  47.930    41.973     55.194  27.367
-#> 7 1.6496 1.977 0.10956  44.628    39.671     50.483  23.031
-#> 8 0.7697 1.936 0.45809   5.884     4.864      7.152   2.835
  print(rIM1xIPC81.drc,digits=4)
#>    Substance ndl   n     lld   lhd    mtype logED50   2.5%  97.5%   unit  sigma
-#> 1   IM13 BF4   9  81  0.5918 3.000 inactive      NA     NA     NA microM     NA
-#> 2   IM14 BF4  20 216 -0.0103 3.176 linlogit      NA     NA     NA microM 0.1529
-#> 3   IM15 BF4   9 135  0.5918 3.000 inactive      NA     NA     NA microM     NA
-#> 4   IM16 BF4   9 108  0.5918 3.000 inactive      NA     NA     NA microM     NA
-#> 5   IM17 BF4   9  81  0.5918 3.000 linlogit  2.5786 2.4935 2.6497 microM 0.2376
-#> 6   IM18 BF4   9 135  0.5918 3.000 linlogit  1.6806 1.6168 1.7362 microM 0.2325
-#> 7   IM19 BF4   9  81  0.5918 3.000 linlogit  1.6496 1.5940 1.6990 microM 0.1453
-#> 8 IM1-10 BF4  11 162 -0.0103 3.000 linlogit  0.7697 0.6774 0.8458 microM 0.2988
-#>           a      b          c    ED50 ED50 2.5% ED50 97.5%   EDx10 EDx10 2.5%
-#> 1        NA     NA         NA      NA        NA         NA      NA         NA
-#> 2 5.390e+15 0.3148 -0.0001736      NA        NA         NA      NA         NA
-#> 3        NA     NA         NA      NA        NA         NA      NA         NA
-#> 4        NA     NA         NA      NA        NA         NA      NA         NA
-#> 5 1.281e+02 2.3001  0.0146821 378.964   311.555    446.372 230.790    202.915
-#> 6 2.079e+01 2.2373  0.0571925  47.930    41.382     54.478  27.367     23.809
-#> 7 1.342e+01 1.9773  0.1094542  44.630    39.260     50.000  23.036     20.614
-#> 8 2.258e+00 1.9362  0.4580784   5.884     4.758      7.011   2.835      2.181
-#>   EDx10 97.5%
-#> 1          NA
-#> 2          NA
-#> 3          NA
-#> 4          NA
-#> 5     258.665
-#> 6      30.925
-#> 7      25.459
-#> 8       3.489
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