From d04bac001217855b4e9a1490a35bef3325441b55 Mon Sep 17 00:00:00 2001 From: Johannes Ranke Date: Fri, 21 Jul 2023 08:24:12 +0200 Subject: Maintenance prompted by email from CRAN - Fix an improper use of 'packageVersion' - Update .Rbuildignore - Fix a link in the README - Static documentation rebuilt by pkgdown::build_site() --- docs/reference/checksubstance.html | 237 +++++++++++++------------------------ 1 file changed, 81 insertions(+), 156 deletions(-) (limited to 'docs/reference/checksubstance.html') diff --git a/docs/reference/checksubstance.html b/docs/reference/checksubstance.html index 39bcd4a..54c5be6 100644 --- a/docs/reference/checksubstance.html +++ b/docs/reference/checksubstance.html @@ -1,65 +1,13 @@ - - - - - - - -Check raw data for a specified substance — checksubstance • drfit - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -Check raw data for a specified substance — checksubstance • drfit - - - - + + -
-
- -
- -
+

Check raw data for a specified substance

@@ -111,104 +45,95 @@ the data.

- 
checksubstance(substance,
-    db = c("cytotox", "enzymes", "ecotox"),
-    experimentator = "%",
-    celltype = "%", enzymetype = "%", organism = "%",
-    endpoint = "%",
-    whereClause = "1", ok = "%")
- -

Arguments

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
substance

The name of the substance identifying it within the database. Matching is not - case-sensitive.

db

The database to be used. Currently, the databases "cytotox" and "enzymes" +

+ 
checksubstance(substance, 
+    db = c("cytotox", "enzymes", "ecotox"), 
+    experimentator = "%",
+    celltype = "%", enzymetype = "%", organism = "%",
+    endpoint = "%",
+    whereClause = "1", ok = "%")
+
+ +
+

Arguments

+
substance
+

The name of the substance identifying it within the database. Matching is not + case-sensitive.

+ +
db
+

The database to be used. Currently, the databases "cytotox" and "enzymes" of the UFT Department of Bioorganic Chemistry are supported (default is - "cytotox").

experimentator

The name of the experimentator whose data is to be used. Default is "%", - which means that data from all experimentators are shown.

celltype

Currently, only data for IPC-81, C6, NB4, HeLa, Jurkat and U937 are + "cytotox").

+ +
experimentator
+

The name of the experimentator whose data is to be used. Default is "%", + which means that data from all experimentators are shown.

+ +
celltype
+

Currently, only data for IPC-81, C6, NB4, HeLa, Jurkat and U937 are supported. Default is "%", i.e. data for any cell type will be - displayed.

enzymetype

Currently, only data for AChE, GR and GST are supported. The default value - is "%", i.e. data for any enzyme type will be displayed.

organism

The latin name of the tested organism, if the ecotox db was selected. The - default value is "%", i.e. data for any organism will be displayed.

endpoint

The endpoint that should be used for selecting the data. Only important if - the database "ecotox" is used. Defaults to "%".

whereClause

With this argument, additional conditions for the SQL query can be set, - e.g. "plate != 710". The default is 1 (in SQL syntax this means TRUE).

ok

With the default value "%", all data in the database is retrieved for the - specified substance.

- -

Value

- -

The function lists a report and shows one graph.

- -

Examples

- 
# Check substance IM14 BF4 in the cytotox database
-if (FALSE) checksubstance("IM14 BF4")
-
- +
+

Value

+ + +

The function lists a report and shows one graph.

+
+

Author

Johannes Ranke - jranke@uni-bremen.de

+ jranke@uni-bremen.de

+
+ +
+

Examples

+ 
# Check substance IM14 BF4 in the cytotox database
+if (FALSE) checksubstance("IM14 BF4")
+
+
+
-
- - + + -- cgit v1.2.1