From fec95dfbf0abe4175649e399eb1fcd698d482a9a Mon Sep 17 00:00:00 2001 From: Johannes Ranke Date: Thu, 30 Mar 2017 17:54:16 +0200 Subject: Add checkcontrols, updates, see ChangeLog --- docs/index.html | 10 +++++----- docs/reference/antifoul.html | 29 ++++++++++++++++++++++++++++- docs/reference/drcfit.html | 11 ++++++++++- 3 files changed, 43 insertions(+), 7 deletions(-) (limited to 'docs') diff --git a/docs/index.html b/docs/index.html index 3ad6d4a..f6c1903 100644 --- a/docs/index.html +++ b/docs/index.html @@ -45,15 +45,15 @@
A somewhat outdated package of basic and easy-to-use functions for fitting dose-response curves to continuous dose-response data, calculating some - (eco)toxicological parameters and plotting the results. Please consider using + toxicological parameters and plotting the results. Please consider using the more powerful and actively developed 'drc' package. Functions that are fitted are the cumulative density function of the lognormal distribution - (probit fit), of the logistic distribution (logit fit), of the weibull - distribution (weibull fit) and a linear-logistic model ("linlogit" fit), + ('probit' fit), of the logistic distribution ('logit' fit), of the Weibull + distribution ('weibull' fit) and a linear-logistic model ('linlogit' fit), derived from the latter, which is used to describe data showing stimulation at low doses (hormesis). In addition, functions checking, plotting and retrieving - dose-response data retrieved from a database accessed via RODBC are included. - As an alternative to the original fitting methods, the algorithms from the drc + dose-response data retrieved from a database accessed via 'RODBC' are included. + As an alternative to the original fitting methods, the algorithms from the 'drc' package can be used.
diff --git a/docs/reference/antifoul.html b/docs/reference/antifoul.html index 5a2b886..f5bc9fd 100644 --- a/docs/reference/antifoul.html +++ b/docs/reference/antifoul.html @@ -128,7 +128,34 @@ linlogit = TRUE, logit = TRUE, weibull = TRUE, chooseone = FALSE, showED50 = TRUE, EDx = c(10))
#> -#> TBT: Fitting data...
#> Error in ED50["1:50", "Lower"]: Indizierung außerhalb der Grenzen
print(rantifoul.drc, digits = 5)
#> Error in print(rantifoul.drc, digits = 5): Objekt 'rantifoul.drc' nicht gefunden
+#> TBT: Fitting data...
#> +#> Zn Pyrithion: Fitting data...
print(rantifoul.drc, digits = 5)
#> Substance ndl n lld lhd mtype logED50 2.5% 97.5% +#> 1 TBT 38 135 -2.7093 2.3979 linlogit NA NA NA +#> 2 TBT 38 135 -2.7093 2.3979 probit -0.16436 -0.28178 -0.072022 +#> 3 TBT 38 135 -2.7093 2.3979 logit -0.16012 -0.27782 -0.067603 +#> 4 TBT 38 135 -2.7093 2.3979 weibull -0.13012 -0.23786 -0.043860 +#> 5 Zn Pyrithion 27 81 -2.1072 2.0000 linlogit -0.41330 -0.54457 -0.312631 +#> 6 Zn Pyrithion 27 81 -2.1072 2.0000 probit -0.39792 -0.52005 -0.302705 +#> 7 Zn Pyrithion 27 81 -2.1072 2.0000 logit -0.40035 -0.52324 -0.304676 +#> 8 Zn Pyrithion 27 81 -2.1072 2.0000 weibull -0.37351 -0.49792 -0.276917 +#> unit sigma a b c ED50 ED50 2.5% ED50 97.5% +#> 1 microM 0.19264 0.71806 1.04061 -0.024169 NA NA NA +#> 2 microM 0.19286 0.68492 -0.64209 NA 0.68492 0.52267 0.84718 +#> 3 microM 0.19199 0.69165 1.05007 NA 0.69165 0.52744 0.85585 +#> 4 microM 0.18900 -0.13012 0.79816 NA 0.74111 0.57828 0.90394 +#> 5 microM 0.22878 0.30926 1.74257 0.611358 0.38610 0.28538 0.48682 +#> 6 microM 0.22866 0.40002 -1.04159 NA 0.40002 0.30196 0.49808 +#> 7 microM 0.22802 0.39779 1.71015 NA 0.39779 0.29975 0.49582 +#> 8 microM 0.23077 -0.37351 1.19152 NA 0.42315 0.31775 0.52855 +#> EDx10 EDx10 2.5% EDx10 97.5% +#> 1 NA NA NA +#> 2 0.093074 0.040308 0.14584 +#> 3 0.085338 0.035963 0.13471 +#> 4 0.069958 0.026197 0.11372 +#> 5 0.120238 0.043513 0.19696 +#> 6 0.116878 0.048151 0.18561 +#> 7 0.110068 0.043085 0.17705 +#> 8 0.087066 0.017958 0.15617
#> +#> Zn Pyrithion: Fitting data...
format(r, digits = 2)
#> Substance ndl n lld lhd mtype logED50 2.5% 97.5% unit sigma a +#> 1 TBT 38 135 -2.7 2.4 probit -0.16 -0.28 -0.072 microM 0.19 0.68 +#> 2 Zn Pyrithion 27 81 -2.1 2.0 probit -0.40 -0.52 -0.303 microM 0.23 0.40 +#> b ED50 ED50 2.5% ED50 97.5% EDx5 EDx5 2.5% EDx5 97.5% EDx10 EDx10 2.5% +#> 1 -0.64 0.68 0.52 0.85 0.053 0.015 0.091 0.093 0.040 +#> 2 -1.04 0.40 0.30 0.50 0.082 0.023 0.142 0.117 0.048 +#> EDx10 97.5% EDx20 EDx20 2.5% EDx20 97.5% +#> 1 0.15 0.18 0.11 0.26 +#> 2 0.19 0.18 0.10 0.26