From 1d0cf91a4d24ef150a2535153d4c4cfeba22dbc9 Mon Sep 17 00:00:00 2001
From: ranke <ranke@d1b72e20-2ee0-0310-a1c4-ad5adbbefcdc>
Date: Mon, 14 Aug 2006 13:58:31 +0000
Subject: - New version just published on my website - Fixes in checkplate,
 checksubstance and checkexperiment - New arguments ltys, xlab and ylab in
 drplot, due to a request by   Ewa Mulkiewicz

git-svn-id: http://kriemhild.uft.uni-bremen.de/svn/drfit@83 d1b72e20-2ee0-0310-a1c4-ad5adbbefcdc
---
 man/checkexperiment.Rd | 13 ++++++++-----
 man/checksubstance.Rd  | 13 +++++++++++--
 man/drplot.Rd          | 13 +++++++++++--
 3 files changed, 30 insertions(+), 9 deletions(-)

(limited to 'man')

diff --git a/man/checkexperiment.Rd b/man/checkexperiment.Rd
index 56db90c..1162d1b 100644
--- a/man/checkexperiment.Rd
+++ b/man/checkexperiment.Rd
@@ -7,16 +7,19 @@
   specified database, box plot controls, and plot the dose-response data.
 }
 \usage{
-  checkplate(id,db="cytotox")
-  checkexperiment(id,db="ecotox")
+  checkplate(id, db = "cytotox")
+  checkexperiment(id, db = "ecotox", endpoint = "\%")
 }
 \arguments{
   \item{id}{
     The id of the experiment or the plate identifying it within the database.}
   \item{db}{
-  The database to be used. Currently, the microtiter plate databases
-  "cytotox", "enzymes" of the UFT Department of Bioorganic Chemistry are
-  supported, as well as the database of ecotoxicity experiments "ecotox".}
+    The database to be used. Currently, the microtiter plate databases
+    "cytotox", "enzymes" of the UFT Department of Bioorganic Chemistry are
+    supported, as well as the database of ecotoxicity experiments "ecotox".}
+  \item{endpoint}{
+    The endpoint that should be used for selecting the data. Only important if
+    the database "ecotox" is used. Defaults to "\%".}
 }
 \value{
   The function lists a report and shows two graphs side by side.
diff --git a/man/checksubstance.Rd b/man/checksubstance.Rd
index f5340fe..387785f 100644
--- a/man/checksubstance.Rd
+++ b/man/checksubstance.Rd
@@ -6,7 +6,10 @@
   the data.
 }
 \usage{
-  checksubstance(substance,db="cytotox",experimentator="\%",celltype="\%",enzymetype="\%",whereClause="1",ok="\%")
+  checksubstance(substance, db = "cytotox", experimentator = "\%", 
+    celltype = "\%", enzymetype = "\%", organism = "\%", 
+    endpoint = "\%",
+    whereClause = "1", ok = "\%")
 }
 \arguments{
   \item{substance}{
@@ -25,9 +28,15 @@
   \item{enzymetype}{
     Currently, only data for AChE, GR and GST are supported. The default value
     is "\%", i.e. data for any enzyme type will be displayed.}
+  \item{organism}{
+    The latin name of the tested organism, if the ecotox db was selected. The
+    default value is "\%", i.e. data for any organism will be displayed.}
+  \item{endpoint}{
+    The endpoint that should be used for selecting the data. Only important if
+    the database "ecotox" is used. Defaults to "\%".}
   \item{whereClause}{
     With this argument, additional conditions for the SQL query can be set, 
-    e.g. "where plate != 710". The default is 1 (in SQL syntax this means TRUE).}
+    e.g. "plate != 710". The default is 1 (in SQL syntax this means TRUE).}
   \item{ok}{
     With the default value "\%", all data in the database is retrieved for the 
     specified substance.}
diff --git a/man/drplot.Rd b/man/drplot.Rd
index bff2388..7924be2 100644
--- a/man/drplot.Rd
+++ b/man/drplot.Rd
@@ -7,8 +7,8 @@
 }
 \usage{
   drplot(drresults, data, dtype, alpha, ctype, path,
-     fileprefix, overlay, xlim, ylim, postscript, pdf, png, bw,
-     pointsize, colors, devoff, lpos)
+     fileprefix, overlay, xlim, ylim, xlab, ylab, postscript, pdf, png, bw,
+     pointsize, colors, ltys, devoff, lpos)
 }
 \arguments{
   \item{drresults}{
@@ -57,6 +57,12 @@
   \item{ylim}{
     The plot limits (min,max) on the response axis.
   }
+  \item{xlab}{
+    The axis title for the x axis. Defaults to "Concentration in" \code{unit}.
+  }
+  \item{ylab}{
+    The axis title for the y axis. Defaults to "Normalized response".
+  }
   \item{postscript}{
     If TRUE, (a) postscript graph(s) will be created. Otherwise, and if 
     the pdf and png arguments are also FALSE, graphics will be
@@ -82,6 +88,9 @@
   \item{colors}{
     This is a vector of colors, defaulting to 1:8, used for plotting the data.
     }
+  \item{ltys}{
+    This is a vector of line types for the dose-response models, defaulting to 1:8.
+    }
   \item{lpos}{
     An optional argument defaulting to "topright" specifying the position
     of the legend by being passed to the legend function. See the help for the
-- 
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