From c61698e427974faffd9b43755a51b6eb9122be90 Mon Sep 17 00:00:00 2001 From: Johannes Ranke Date: Sat, 15 Sep 2018 19:04:23 +0200 Subject: Switch to odbc, reformattting of code to make it more readable. Also remove outdated hyperlinks from the help files. --- man/XY.Rd | 3 --- man/antifoul.Rd | 3 --- man/checkcontrols.Rd | 4 ++-- man/checkexperiment.Rd | 5 ++--- man/checksubstance.Rd | 5 +++-- man/drcfit.Rd | 1 - man/drdata.Rd | 16 ++++++++++------ man/drfit.Rd | 1 - man/drplot.Rd | 1 - man/linlogitf.Rd | 1 - 10 files changed, 17 insertions(+), 23 deletions(-) (limited to 'man') diff --git a/man/XY.Rd b/man/XY.Rd index 82a48fe..54e6bdc 100644 --- a/man/XY.Rd +++ b/man/XY.Rd @@ -14,7 +14,4 @@ \examples{ \dontrun{demo(XY)} } -\source{ - \url{http://www.uft.uni-bremen.de/chemie} -} \keyword{datasets} diff --git a/man/antifoul.Rd b/man/antifoul.Rd index e782636..7d814a6 100644 --- a/man/antifoul.Rd +++ b/man/antifoul.Rd @@ -28,7 +28,4 @@ rantifoul.drc <- drcfit(antifoul, print(rantifoul.drc, digits = 5) } -\source{ - \url{http://www.uft.uni-bremen.de/chemie} -} \keyword{datasets} diff --git a/man/checkcontrols.Rd b/man/checkcontrols.Rd index 91d2dff..d99c342 100644 --- a/man/checkcontrols.Rd +++ b/man/checkcontrols.Rd @@ -6,7 +6,8 @@ experiments from a specified database. } \usage{ - checkcontrols(last = 10, id = NULL, db = "cytotox", + checkcontrols(last = 10, id = NULL, + db = c("cytotox", "enzymes", "ecotox"), celltype = "IPC-81", enzymetype = "AChE", organism = "Vibrio fischeri", endpoint = "\%", qcc = c("R", "xbar")) @@ -54,6 +55,5 @@ \author{ Johannes Ranke \email{jranke@uni-bremen.de} - \url{http://www.uft.uni-bremen.de/chemie/ranke} } \keyword{database} diff --git a/man/checkexperiment.Rd b/man/checkexperiment.Rd index 6a682fa..9d365f8 100644 --- a/man/checkexperiment.Rd +++ b/man/checkexperiment.Rd @@ -7,8 +7,8 @@ specified database, box plot controls, and plot the dose-response data. } \usage{ - checkplate(id, db = "cytotox") - checkexperiment(id, db = "ecotox", endpoint = "\%") + checkplate(id, db = c("cytotox", "enzymes")) + checkexperiment(id, db = c("ecotox", "cytotox", "enzymes"), endpoint = "\%") } \arguments{ \item{id}{ @@ -31,6 +31,5 @@ \author{ Johannes Ranke \email{jranke@uni-bremen.de} - \url{http://www.uft.uni-bremen.de/chemie/ranke} } \keyword{database} diff --git a/man/checksubstance.Rd b/man/checksubstance.Rd index 284ee88..2e4d62d 100644 --- a/man/checksubstance.Rd +++ b/man/checksubstance.Rd @@ -6,7 +6,9 @@ the data. } \usage{ - checksubstance(substance, db = "cytotox", experimentator = "\%", + checksubstance(substance, + db = c("cytotox", "enzymes", "ecotox"), + experimentator = "\%", celltype = "\%", enzymetype = "\%", organism = "\%", endpoint = "\%", whereClause = "1", ok = "\%") @@ -52,7 +54,6 @@ \author{ Johannes Ranke \email{jranke@uni-bremen.de} - \url{http://www.uft.uni-bremen.de/chemie/ranke} } \keyword{database} \keyword{internal} diff --git a/man/drcfit.Rd b/man/drcfit.Rd index 67462ba..db84875 100644 --- a/man/drcfit.Rd +++ b/man/drcfit.Rd @@ -148,7 +148,6 @@ format(r, digits = 2) } \author{ Johannes Ranke \email{jranke@uni-bremen.de} - \url{http://www.uft.uni-bremen.de/chemie/ranke} The functionality of the drc package used under the hood in this function was written by Christian Ritz. } diff --git a/man/drdata.Rd b/man/drdata.Rd index 2bb0b4d..3999fc6 100644 --- a/man/drdata.Rd +++ b/man/drdata.Rd @@ -5,8 +5,9 @@ Get dose-response data from an adequate ODBC data source } \usage{ - drdata(substances, experimentator = "\%", db = "cytotox", celltype = "IPC-81", - enzymetype="AChE", organism="Vibrio fischeri", endpoint="Luminescence", + drdata(substances, experimentator = "\%", db = "cytotox", + celltype = "IPC-81", enzymetype = "AChE", organism = "Vibrio fischeri", + endpoint = "Luminescence", whereClause = "1", ok = "'ok','no fit'") } \arguments{ @@ -78,14 +79,17 @@ } } \examples{ -# Get cytotoxicity data for Tributyltin and zinc pyrithione, tested with IPC-81 -# cells -\dontrun{drdata(c("TBT","ZnPT2"))} + \dontrun{ + + # Get cytotoxicity data for Tributyltin and zinc pyrithione, tested with IPC-81 + # cells + drdata(c("TBT", "ZnPT2")) + + } } \author{ Johannes Ranke \email{jranke@uni-bremen.de} - \url{http://www.uft.uni-bremen.de/chemie/ranke} } \keyword{IO} \keyword{database} diff --git a/man/drfit.Rd b/man/drfit.Rd index ec7fa70..b44a20f 100644 --- a/man/drfit.Rd +++ b/man/drfit.Rd @@ -177,7 +177,6 @@ format(r, digits = 2) \author{ Johannes Ranke \email{jranke@uni-bremen.de} - \url{http://www.uft.uni-bremen.de/chemie/ranke} } \keyword{models} \keyword{regression} diff --git a/man/drplot.Rd b/man/drplot.Rd index d8d7eb3..559ed8e 100644 --- a/man/drplot.Rd +++ b/man/drplot.Rd @@ -130,7 +130,6 @@ drplot(r,antifoul) \author{ Johannes Ranke \email{jranke@uni-bremen.de} - \url{http://www.uft.uni-bremen.de/chemie/ranke} } \keyword{models} \keyword{regression} diff --git a/man/linlogitf.Rd b/man/linlogitf.Rd index 2c9ddc4..a4360d6 100644 --- a/man/linlogitf.Rd +++ b/man/linlogitf.Rd @@ -29,7 +29,6 @@ \author{ Johannes Ranke \email{jranke@uni-bremen.de} - \url{http://www.uft.uni-bremen.de/chemie/ranke} } \keyword{models} \keyword{regression} -- cgit v1.2.1