From 88937b957b30b9e197858ebc3a3219079fd01f96 Mon Sep 17 00:00:00 2001 From: ranke Date: Sun, 16 Dec 2012 01:39:42 +0000 Subject: Added NAMESPACE and fixed the tests git-svn-id: http://kriemhild.uft.uni-bremen.de/svn/drfit@96 d1b72e20-2ee0-0310-a1c4-ad5adbbefcdc --- tests/pyrithione.Rout.save | 72 +++++++++++++++++++++++++--------------------- 1 file changed, 40 insertions(+), 32 deletions(-) (limited to 'tests/pyrithione.Rout.save') diff --git a/tests/pyrithione.Rout.save b/tests/pyrithione.Rout.save index af67552..eb92b80 100644 --- a/tests/pyrithione.Rout.save +++ b/tests/pyrithione.Rout.save @@ -1,7 +1,8 @@ -R version 2.9.2 (2009-08-24) -Copyright (C) 2009 The R Foundation for Statistical Computing +R version 2.15.1 (2012-06-22) -- "Roasted Marshmallows" +Copyright (C) 2012 The R Foundation for Statistical Computing ISBN 3-900051-07-0 +Platform: x86_64-pc-linux-gnu (64-bit) R is free software and comes with ABSOLUTELY NO WARRANTY. You are welcome to redistribute it under certain conditions. @@ -19,7 +20,7 @@ Type 'q()' to quit R. Loading required package: MASS Loading required package: RODBC > data(pyrithione) -> rpyr <- drfit(pyrithione,linlogit=TRUE,linlogitWrong=c("MSPT","MSPHI")) +> rpyr <- drfit(pyrithione,linlogit=TRUE,linlogitWrong=c("MSPT","MSPHI","PyS")) Na Pyrithion: Fitting data... @@ -47,6 +48,10 @@ Waiting for profiling to be done... PyS: Fitting data... Waiting for profiling to be done... +Error in numericDeriv(form[[3L]], names(ind), env, ifelse(internalPars < : + Missing value or an infinity produced when evaluating the model +In addition: Warning message: +In pnorm(-log10(dose), -logED50, scale) : NaNs produced Zn Pyrithion: Fitting data... @@ -70,33 +75,36 @@ Waiting for profiling to be done... NaJ: Fitting data... -> print(rpyr,digits=3) - Substance ndl n lld lhd mtype logED50 2.5% 97.5% unit sigma -1 Na Pyrithion 20 108 -2.107 2.0 linlogit -0.346 -0.428 -0.2648 microM 0.209 -2 Pyridin 19 161 0.592 3.7 inactive NA NA NA microM NA -3 PyNO 19 81 0.592 3.7 no fit NA NA NA microM 0.107 -4 (PT)2 19 81 -2.408 2.0 linlogit -0.420 -0.533 NA microM 0.205 -5 MSO2P 28 108 -1.709 3.7 inactive NA NA NA microM NA -6 MSPHI 19 81 0.592 3.7 probit 3.663 3.555 3.8802 microM 0.129 -7 PyS 18 80 -0.408 3.0 linlogit 2.756 NA 2.8228 microM 0.146 -8 Zn Pyrithion 27 81 -2.107 2.0 linlogit -0.413 -0.529 -0.2998 microM 0.229 -9 Cu Pyrithion 19 79 -2.408 2.0 linlogit -0.307 -0.475 -0.1544 microM 0.245 -10 Fe Pyrithion 19 81 -2.408 2.0 linlogit -0.353 -0.500 -0.2146 microM 0.234 -11 MSPT 18 108 -0.408 3.0 probit 2.138 2.071 2.2051 microM 0.229 -12 TBT 38 135 -2.709 2.4 linlogit -0.158 -0.260 -0.0505 microM 0.193 -13 NaJ 10 108 0.592 3.3 inactive NA NA NA microM NA - a b c -1 -0.346 2.119 -0.266998 -2 NA NA NA -3 NA NA NA -4 -0.420 1.847 -0.515071 -5 NA NA NA -6 3.663 0.439 NA -7 2.756 0.743 -0.000993 -8 -0.413 1.742 0.610900 -9 -0.307 1.015 -0.048966 -10 -0.353 1.182 0.025082 -11 2.138 0.211 NA -12 -0.158 1.041 -0.024165 -13 NA NA NA +> print(rpyr,digits=4) + Substance ndl n lld lhd mtype logED50 2.5% 97.5% unit +1 Na Pyrithion 20 108 -2.1072 2.000 linlogit -0.3461 -0.4276 -0.26479 microM +2 Pyridin 19 161 0.5918 3.699 inactive NA NA NA microM +3 PyNO 19 81 0.5918 3.699 no fit NA NA NA microM +4 (PT)2 19 81 -2.4082 2.000 linlogit -0.4197 -0.5326 NA microM +5 MSO2P 28 108 -1.7093 3.699 inactive NA NA NA microM +6 MSPHI 19 81 0.5918 3.699 probit 3.6625 3.5546 3.88019 microM +7 PyS 18 80 -0.4082 3.000 probit 2.6818 NA NA microM +8 Zn Pyrithion 27 81 -2.1072 2.000 linlogit -0.4133 -0.5293 -0.29980 microM +9 Cu Pyrithion 19 79 -2.4082 2.000 linlogit -0.3075 -0.4753 -0.15444 microM +10 Fe Pyrithion 19 81 -2.4082 2.000 linlogit -0.3535 -0.5004 -0.21460 microM +11 MSPT 18 108 -0.4082 3.000 probit 2.1385 2.0709 2.20511 microM +12 TBT 38 135 -2.7093 2.398 linlogit -0.1581 -0.2602 -0.05047 microM +13 NaJ 10 108 0.5918 3.301 inactive NA NA NA microM + sigma a b c +1 0.2086 -0.3461 2.1188 -0.26700 +2 NA NA NA NA +3 0.1073 NA NA NA +4 0.2051 -0.4197 1.8467 -0.51507 +5 NA NA NA NA +6 0.1294 3.6625 0.4387 NA +7 0.1340 2.6818 0.1250 NA +8 0.2288 -0.4133 1.7425 0.61081 +9 0.2449 -0.3075 1.0151 -0.04897 +10 0.2338 -0.3535 1.1823 0.02508 +11 0.2288 2.1385 0.2113 NA +12 0.1926 -0.1581 1.0407 -0.02416 +13 NA NA NA NA > +> proc.time() + user system elapsed + 1.556 0.044 1.595 -- cgit v1.2.1