checksubstance.RdReport metadata for a specified substance from a specified database, and plot the data.
checksubstance(substance, db = c("cytotox", "enzymes", "ecotox"), experimentator = "%", celltype = "%", enzymetype = "%", organism = "%", endpoint = "%", whereClause = "1", ok = "%")
| substance | The name of the substance identifying it within the database. Matching is not case-sensitive. |
|---|---|
| db | The database to be used. Currently, the databases "cytotox" and "enzymes" of the UFT Department of Bioorganic Chemistry are supported (default is "cytotox"). |
| experimentator | The name of the experimentator whose data is to be used. Default is "%", which means that data from all experimentators are shown. |
| celltype | Currently, only data for IPC-81, C6, NB4, HeLa, Jurkat and U937 are supported. Default is "%", i.e. data for any cell type will be displayed. |
| enzymetype | Currently, only data for AChE, GR and GST are supported. The default value is "%", i.e. data for any enzyme type will be displayed. |
| organism | The latin name of the tested organism, if the ecotox db was selected. The default value is "%", i.e. data for any organism will be displayed. |
| endpoint | The endpoint that should be used for selecting the data. Only important if the database "ecotox" is used. Defaults to "%". |
| whereClause | With this argument, additional conditions for the SQL query can be set, e.g. "plate != 710". The default is 1 (in SQL syntax this means TRUE). |
| ok | With the default value "%", all data in the database is retrieved for the specified substance. |
The function lists a report and shows one graph.
# Check substance IM14 BF4 in the cytotox database# NOT RUN { checksubstance("IM14 BF4") # }