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<h1>Check raw data for a specified substance</h1>
<div class="hidden name"><code>checksubstance.Rd</code></div>
</div>
<div class="ref-description">
<p>Report metadata for a specified substance from a specified database, and plot
the data.</p>
</div>
<div id="ref-usage">
<div class="sourceCode"><pre class="sourceCode r"><code><span><span class="fu">checksubstance</span><span class="op">(</span><span class="va">substance</span>, </span>
<span> db <span class="op">=</span> <span class="fu"><a href="https://rdrr.io/r/base/c.html" class="external-link">c</a></span><span class="op">(</span><span class="st">"cytotox"</span>, <span class="st">"enzymes"</span>, <span class="st">"ecotox"</span><span class="op">)</span>, </span>
<span> experimentator <span class="op">=</span> <span class="st">"%"</span>,</span>
<span> celltype <span class="op">=</span> <span class="st">"%"</span>, enzymetype <span class="op">=</span> <span class="st">"%"</span>, organism <span class="op">=</span> <span class="st">"%"</span>,</span>
<span> endpoint <span class="op">=</span> <span class="st">"%"</span>,</span>
<span> whereClause <span class="op">=</span> <span class="st">"1"</span>, ok <span class="op">=</span> <span class="st">"%"</span><span class="op">)</span></span></code></pre></div>
</div>
<div id="arguments">
<h2>Arguments</h2>
<dl><dt>substance</dt>
<dd><p>The name of the substance identifying it within the database. Matching is not
case-sensitive.</p></dd>
<dt>db</dt>
<dd><p>The database to be used. Currently, the databases "cytotox" and "enzymes"
of the UFT Department of Bioorganic Chemistry are supported (default is
"cytotox").</p></dd>
<dt>experimentator</dt>
<dd><p>The name of the experimentator whose data is to be used. Default is "%",
which means that data from all experimentators are shown.</p></dd>
<dt>celltype</dt>
<dd><p>Currently, only data for IPC-81, C6, NB4, HeLa, Jurkat and U937 are
supported. Default is "%", i.e. data for any cell type will be
displayed.</p></dd>
<dt>enzymetype</dt>
<dd><p>Currently, only data for AChE, GR and GST are supported. The default value
is "%", i.e. data for any enzyme type will be displayed.</p></dd>
<dt>organism</dt>
<dd><p>The latin name of the tested organism, if the ecotox db was selected. The
default value is "%", i.e. data for any organism will be displayed.</p></dd>
<dt>endpoint</dt>
<dd><p>The endpoint that should be used for selecting the data. Only important if
the database "ecotox" is used. Defaults to "%".</p></dd>
<dt>whereClause</dt>
<dd><p>With this argument, additional conditions for the SQL query can be set,
e.g. "plate != 710". The default is 1 (in SQL syntax this means TRUE).</p></dd>
<dt>ok</dt>
<dd><p>With the default value "%", all data in the database is retrieved for the
specified substance.</p></dd>
</dl></div>
<div id="value">
<h2>Value</h2>
<p>The function lists a report and shows one graph.</p>
</div>
<div id="author">
<h2>Author</h2>
<p>Johannes Ranke
<a href="mailto:jranke@uni-bremen.de">jranke@uni-bremen.de</a></p>
</div>
<div id="ref-examples">
<h2>Examples</h2>
<div class="sourceCode"><pre class="sourceCode r"><code><span class="r-in"><span><span class="co"># Check substance IM14 BF4 in the cytotox database</span></span></span>
<span class="r-in"><span><span class="kw">if</span> <span class="op">(</span><span class="cn">FALSE</span><span class="op">)</span> <span class="fu">checksubstance</span><span class="op">(</span><span class="st">"IM14 BF4"</span><span class="op">)</span></span></span>
</code></pre></div>
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