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\name{drplot}
\alias{drplot}
\title{Plot dose-response models}
\description{
Produce graphics of dose-response data and dose-response relationships
either combined or separately, for one or more substances.
}
\usage{
drplot(drresults, data, dtype, alpha, path, fileprefix, overlay,
postscript, color, colors, fitcolors)
}
\arguments{
\item{drresults}{
A data frame as returned from \code{\link{drfit}}.
}
\item{data}{
A data frame as returned from \code{\link{drdata}}. If data is to be
plotted, the data frame has to contain at least a factor called
"substance", a vector called "unit" containing the unit used for the dose,
a column "response" with the response values of the test system normalized
between 0 and 1, a column "dose" with the numeric dose values and a factor
called "dosefactor" containing the dose as a factor. If plotting of the data is
not required, data can be set to FALSE.
}
\item{dtype}{
A string describing if the raw data should be plotted ("raw"), or
an error bar should be constructed from the standard deviations of the
responses at each dose level ("std", default value) or from the confidence
intervals ("conf"). Of course, dtype only makes a difference, if a valid data
object has been referenced.
}
\item{alpha}{
The confidence level, defaulting to 0.95, only used if dtype "conf" has been
chosen.
}
\item{path}{
The path where graphic files should be put if any are produced. Defaults
to "./" i.e. the current working directory of R.
}
\item{fileprefix}{
A string which will form the beginning of each filename, if graphic files are
created. Defaults to "drplot".
}
\item{overlay}{
If TRUE, all output will be put into one graph, otherwise a separate graph
will be created for each substance. In the latter case, on-screen display
(postscript=FALSE) only works correctly for data plots. Dose-response models
will all be put into the last graph in this case.
}
\item{postscript}{
If TRUE, (a) postscript graph(s) will be created. Otherwise, graphics will be
displayed with a screen graphics device.
}
\item{color}{
If TRUE, a sensible selection of colors will be attempted. If false, everything
will be drawn in black
}
\item{colors}{
This is a vector of colors, defaulting to 1:8, used for plotting the data.
}
\item{fitcolors}{
Here you can specify a palette for the colors of the dose-response fits. The
default value is "default", which produces rainbow colors.
}
}
\value{
\item{results}{
A data frame containing at least one line for each substance. If the data did not
show a mean response < 0.5 at the highest dose level, the modeltype is set to "none".
Every successful fit is reported in one line. Parameters of the fitted curves are only
reported if the fitted EC50 is not higher than the highest dose.}
}
\examples{
\dontrun{data(antifoul)}
\dontrun{r <- drfit(antifoul)}
\dontrun{format(r,digits=2)}
}
\author{
Johannes Ranke
\email{jranke@uni-bremen.de}
\url{http://www.uft.uni-bremen.de/chemie/ranke}
}
\keyword{models}
\keyword{regression}
\keyword{nonlinear}
|
