gmkin/inst/unitTests, branch main Browser based graphical user interface for mkin (also on github) https://cgit.jrwb.de/gmkin/atom?h=main 2014-05-07T12:47:28Z Fork the gmkin GUI from mkin. See ChangeLog for details 2014-05-07T12:47:28Z Johannes Ranke jranke@uni-bremen.de 2014-05-07T12:47:28Z urn:sha1:e959fde98f95f3595e01490b67892678bbcd1b27 Format of gmkin workspace files, copyright, updates 2014-02-27T15:36:11Z Johannes Ranke jranke@uni-bremen.de 2014-02-27T15:36:11Z urn:sha1:6910e67398dbcb548dae179d361cb24404ad75a4 - Change the format of the workspace files of gmkin so they can be distributed in the mkin package - Add gmkin workspace datasets FOCUS_2006_gmkin and FOCUS_2006_Z_gmkin - Restrict the unit test with the Schaefer data to parent and primary metabolites as formation fraction and DT50 for A2 are higly correlated and passing the test is platform dependent. For example, the test fails in 1 out of 14 platforms on CRAN as of today - Add Eurofins Regulatory AG copyright notices - Import FME and deSolve instead of depending on them to have cleaner startup - Add a simple makefile 2013-11-11T20:22:40Z jranke jranke@edb9625f-4e0d-4859-8d74-9fd3b1da38cb 2013-11-11T20:22:40Z urn:sha1:4091cfd04c58cdd106b7c48c8b9a51e9179f4875 - Add a .Rbuildignore file - Clean up unit tests a bit - Test the gwidgets notebook from the knitr demo git-svn-id: svn+ssh://svn.r-forge.r-project.org/svnroot/kinfit/pkg/mkin@150 edb9625f-4e0d-4859-8d74-9fd3b1da38cb - Now the eigenvalue based solution for FOCUS 2006 D works flawlessly with 2013-11-04T20:41:35Z jranke jranke@edb9625f-4e0d-4859-8d74-9fd3b1da38cb 2013-11-04T20:41:35Z urn:sha1:5aed88cadfd98defe12ffebd27ff5d199cc34edd default starting parameters - Took out a relatively long-lasting test that did not say much git-svn-id: svn+ssh://svn.r-forge.r-project.org/svnroot/kinfit/pkg/mkin@136 edb9625f-4e0d-4859-8d74-9fd3b1da38cb - Update the TODO list, setting some requirements for version 1.0 2013-04-14T12:42:06Z jranke jranke@edb9625f-4e0d-4859-8d74-9fd3b1da38cb 2013-04-14T12:42:06Z urn:sha1:6168089ac43664c10ca2dc1281c8648fbf3b35a9 - Check that initial values specified using parms.ini are actually needed for the model, stop otherwise - List all formation fractions in the same place in the summary, also if they were fitted in the model - Include an FOMC model coupled to two metabolites in the unit tests - Some updates needed because of the above - Update of static documentation including the vignettes - Update of the mkin vignettes in the vignettes directory git-svn-id: svn+ssh://svn.r-forge.r-project.org/svnroot/kinfit/pkg/mkin@82 edb9625f-4e0d-4859-8d74-9fd3b1da38cb - Completion of the multicompartment part of the mkin examples vignette 2013-02-18T22:11:49Z jranke jranke@edb9625f-4e0d-4859-8d74-9fd3b1da38cb 2013-02-18T22:11:49Z urn:sha1:fa10b85d6bb964742d2c5a3e3f633a5238c43d56 - Fix to chi2 error level calculation by correctly returning backtransformed parameters as bparms.optim and bparms.fixed - Adaptations of unit tests, summary and plot functions git-svn-id: svn+ssh://svn.r-forge.r-project.org/svnroot/kinfit/pkg/mkin@67 edb9625f-4e0d-4859-8d74-9fd3b1da38cb - Document endpoints() function 2012-06-25T23:45:39Z jranke jranke@edb9625f-4e0d-4859-8d74-9fd3b1da38cb 2012-06-25T23:45:39Z urn:sha1:5f72a28432c024ab9d57b70e87186dcc607c0903 - Fix unit tests that were broken by introduction of the endpoints function - Small documentation fixes - Format output of backtransformed parameters - Integrate snippet for making static documentation using staticdocs by Hadley Wickham git-svn-id: svn+ssh://svn.r-forge.r-project.org/svnroot/kinfit/pkg/mkin@41 edb9625f-4e0d-4859-8d74-9fd3b1da38cb - Some more unit tests 2012-04-25T21:50:23Z jranke jranke@edb9625f-4e0d-4859-8d74-9fd3b1da38cb 2012-04-25T21:50:23Z urn:sha1:1628fde60496532a610db7fecfc3c19efa56b8d6 - Some more other tests in test.R - Adaptation of mkinplot git-svn-id: svn+ssh://svn.r-forge.r-project.org/svnroot/kinfit/pkg/mkin@36 edb9625f-4e0d-4859-8d74-9fd3b1da38cb - Transferred some testing code from test.R to unit tests for mkinpredict 2012-04-25T10:33:53Z jranke jranke@edb9625f-4e0d-4859-8d74-9fd3b1da38cb 2012-04-25T10:33:53Z urn:sha1:c4e8498ee688fff1e1b2df1a7a65f888cb0d9d84 - Fixed the output format of mkinpredict to be uniform across solution types git-svn-id: svn+ssh://svn.r-forge.r-project.org/svnroot/kinfit/pkg/mkin@33 edb9625f-4e0d-4859-8d74-9fd3b1da38cb - Added the reference fit data for FOCUS 2006 datasets from the kinfit package 2012-04-24T17:33:56Z jranke jranke@edb9625f-4e0d-4859-8d74-9fd3b1da38cb 2012-04-24T17:33:56Z urn:sha1:081b5f25cc4ef779175307d9ce20672e0573b7c9 - Used these data in unit tests for parent only models - Fixed SFORB data and calculation of formation fractions along the way - Reintroduced the test for the Schaefer 2007 data - Got rid of the mkinmod unit tests - they are too hard to maintain and the mkinfit tests test the model definitions as well git-svn-id: svn+ssh://svn.r-forge.r-project.org/svnroot/kinfit/pkg/mkin@32 edb9625f-4e0d-4859-8d74-9fd3b1da38cb