- Some more unit tests

- Some more other tests in test.R
- Adaptation of mkinplot



git-svn-id: svn+ssh://svn.r-forge.r-project.org/svnroot/kinfit/pkg/mkin@36 edb9625f-4e0d-4859-8d74-9fd3b1da38cb

1 files changed, 7 insertions, 8 deletions

diff --git a/R/mkinfit.R b/R/mkinfit.R
index 6e455e1..cb0396f 100644
--- a/R/mkinfit.R
+++ b/R/mkinfit.R
@@ -170,13 +170,11 @@ mkinfit <- function(mkinmod, observed,
 

   # We need to return some more data for summary and plotting

   fit$solution_type <- solution_type

-  if (solution_type == "eigen") {

-    fit$coefmat <- mkinmod$coefmat

-  } 

 

-  # We also need various other information for summary and plotting

-  fit$map <- mkinmod$map

-  fit$diffs <- mkinmod$diffs

+  # We also need the model for summary and plotting

+  fit$mkinmod <- mkinmod

+

+  # We need data and predictions for summary and plotting

   fit$observed <- mkin_long_to_wide(observed)

   predicted_long <- mkin_wide_to_long(out_predicted, time = "time")

   fit$predicted <- out_predicted

@@ -348,6 +346,7 @@ summary.mkinfit <- function(object, data = TRUE, distimes = TRUE, ...) {
           Rversion = paste(R.version$major, R.version$minor, sep="."),

 	  date.fit = object$date,

 	  date.summary = date(),

+	  use_of_ff = object$mkinmod$use_of_ff,

           residuals = object$residuals,

           residualVariance = resvar,

           sigma = sqrt(resvar),

@@ -358,7 +357,7 @@ summary.mkinfit <- function(object, data = TRUE, distimes = TRUE, ...) {
           stopmess = message,

           par = param)

 

-  ans$diffs <- object$diffs

+  ans$diffs <- object$mkinmod$diffs

   if(data) ans$data <- object$data

   ans$start <- object$start

 

@@ -411,7 +410,7 @@ print.summary.mkinfit <- function(x, digits = max(3, getOption("digits") - 3), .
   }    

 

   printff <- !is.null(x$ff)

-  if(printff){

+  if(printff & x$use_of_ff == "min"){

     cat("\nEstimated formation fractions:\n")

     print(data.frame(ff = x$ff), digits=digits,...)

   }