Fork the gmkin GUI from mkin. See ChangeLog for details

1 files changed, 0 insertions, 62 deletions

diff --git a/R/mkinparplot.R b/R/mkinparplot.R
deleted file mode 100644
index 28c1d2a..0000000
--- a/R/mkinparplot.R
+++ /dev/null
@@ -1,62 +0,0 @@
-# Copyright (C) 2014 Johannes Ranke
-# Contact: jranke@uni-bremen.de
-
-# This file is part of the R package mkin
-
-# mkin is free software: you can redistribute it and/or modify it under the
-# terms of the GNU General Public License as published by the Free Software
-# Foundation, either version 3 of the License, or (at your option) any later
-# version.
-
-# This program is distributed in the hope that it will be useful, but WITHOUT
-# ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS
-# FOR A PARTICULAR PURPOSE.  See the GNU General Public License for more
-# details.
-
-# You should have received a copy of the GNU General Public License along with
-# this program. If not, see <http://www.gnu.org/licenses/>
-mkinparplot <- function(object) {
-  state.optim = rownames(subset(object$start, type == "state"))
-  deparms.optim = rownames(subset(object$start, type == "deparm"))
-  fractions.optim = grep("^f_", deparms.optim, value = TRUE)
-  if ("g" %in% deparms.optim) fractions.optim <- c("g", fractions.optim)
-  rates.optim.unsorted = setdiff(deparms.optim, fractions.optim)
-  rates.optim <- rownames(object$start[rates.optim.unsorted, ])
-  n.plot <- c(state.optim = length(state.optim), 
-              rates.optim = length(rates.optim), 
-              fractions.optim = length(fractions.optim))
-  n.plot <- n.plot[n.plot > 0]
-
-  oldpars <- par(no.readonly = TRUE)
-  layout(matrix(1:length(n.plot), ncol = 1), heights = n.plot + 1)
-
-  s <- summary(object)
-  bpar <- data.frame(t(s$bpar))
-  par(mar = c(2.1, 2.1, 0.1, 2.1))
-  par(cex = 1)
-  for (type in names(n.plot)) {
-    parnames <- get(type)
-    values <- bpar[parnames]
-    xlim = switch(type,
-                  state.optim = range(c(0, unlist(values)), 
-                                      na.rm = TRUE, finite = TRUE),
-                  rates.optim = range(c(0, unlist(values)), 
-                                      na.rm = TRUE, finite = TRUE),
-                  fractions.optim = range(c(0, 1, unlist(values)), 
-                                          na.rm = TRUE, finite = TRUE))
-    stripchart(values["Estimate", ][length(parnames):1], 
-               xlim = xlim,
-               ylim = c(0.5, length(get(type)) + 0.5),
-               yaxt = "n")
-    if (type %in% c("rates.optim", "fractions.optim")) abline(v = 0, lty = 2)
-    if (type %in% c("fractions.optim")) abline(v = 1, lty = 2)
-    position <- ifelse(values["Estimate", ] < mean(xlim)/2, "right", "left")
-    text(ifelse(position == "left", min(xlim), max(xlim)), 
-         length(parnames):1, parnames, 
-         pos = ifelse(position == "left", 4, 2))
-    arrows(as.numeric(values["Lower", ]), length(parnames):1, 
-           as.numeric(values["Upper", ]), length(parnames):1, 
-           code = 3, angle = 90, length = 0.05)
-  }
-  par(oldpars)
-}