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author | = <=> | 2013-12-04 10:25:14 +0100 |
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committer | = <=> | 2013-12-04 10:25:14 +0100 |
commit | 8b94131388071980e62c17190eb4229e89975a0c (patch) | |
tree | 48f90fae958d466076f9f3b0aa8ec733c9c7bbee /man/mkinfit.Rd | |
parent | f7be9d1c545b6385f53603d2861e0a16e3044165 (diff) |
Make it possible to use different ode solvers
Diffstat (limited to 'man/mkinfit.Rd')
-rw-r--r-- | man/mkinfit.Rd | 6 |
1 files changed, 6 insertions, 0 deletions
diff --git a/man/mkinfit.Rd b/man/mkinfit.Rd index 51e26ed..0c5d76a 100644 --- a/man/mkinfit.Rd +++ b/man/mkinfit.Rd @@ -20,6 +20,7 @@ mkinfit(mkinmod, observed, state.ini = c(100, rep(0, length(mkinmod$diffs) - 1)), fixed_parms = NULL, fixed_initials = names(mkinmod$diffs)[-1], solution_type = "auto", + method.ode = "lsoda", method.modFit = "Marq", control.modFit = list(), plot = FALSE, quiet = FALSE, err = NULL, weight = "none", @@ -85,6 +86,11 @@ mkinfit(mkinmod, observed, dependence of degradation rates and metabolites). This argument is passed on to the helper function \code{\link{mkinpredict}}. } + \item{method.ode}{ + The solution method passed via \code{\link{mkinpredict}} to + \code{\link{ode}} in case the solution type is "deSolve". The default + "lsoda" is performant, but sometimes fails to converge. + } \item{method.modFit}{ The optimisation method passed to \code{\link{modFit}}. The default "Marq" is the Levenberg Marquardt algorithm \code{\link{nls.lm}} from the package |