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authorJohannes Ranke <jranke@uni-bremen.de>2014-01-22 10:46:44 +0100
committerJohannes Ranke <jranke@uni-bremen.de>2014-01-22 10:46:44 +0100
commit9ef8537149a37ebef8a2a18232644202872bbe55 (patch)
tree066de4b62d6fa8078637fe23ae466fe0f525629e /man/mkinfit.Rd
parentaf4a101d2cca91598ec5d1dc297c31a75517b139 (diff)
parent8b94131388071980e62c17190eb4229e89975a0c (diff)
Merge branch 'master' of https://github.com/jranke/mkin
Conflicts: DESCRIPTION R/mkinfit.R
Diffstat (limited to 'man/mkinfit.Rd')
-rw-r--r--man/mkinfit.Rd6
1 files changed, 6 insertions, 0 deletions
diff --git a/man/mkinfit.Rd b/man/mkinfit.Rd
index 51e26ed..0c5d76a 100644
--- a/man/mkinfit.Rd
+++ b/man/mkinfit.Rd
@@ -20,6 +20,7 @@ mkinfit(mkinmod, observed,
state.ini = c(100, rep(0, length(mkinmod$diffs) - 1)),
fixed_parms = NULL, fixed_initials = names(mkinmod$diffs)[-1],
solution_type = "auto",
+ method.ode = "lsoda",
method.modFit = "Marq",
control.modFit = list(),
plot = FALSE, quiet = FALSE, err = NULL, weight = "none",
@@ -85,6 +86,11 @@ mkinfit(mkinmod, observed,
dependence of degradation rates and metabolites). This argument is passed
on to the helper function \code{\link{mkinpredict}}.
}
+ \item{method.ode}{
+ The solution method passed via \code{\link{mkinpredict}} to
+ \code{\link{ode}} in case the solution type is "deSolve". The default
+ "lsoda" is performant, but sometimes fails to converge.
+ }
\item{method.modFit}{
The optimisation method passed to \code{\link{modFit}}. The default "Marq"
is the Levenberg Marquardt algorithm \code{\link{nls.lm}} from the package

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