Update kinfit and mkin to the latest version published on BerliOS.

git-svn-id: svn+ssh://svn.r-forge.r-project.org/svnroot/kinfit/pkg/mkin@17 edb9625f-4e0d-4859-8d74-9fd3b1da38cb

1 files changed, 11 insertions, 7 deletions

diff --git a/man/mkinmod.Rd b/man/mkinmod.Rd
index 7ec9627..7c11735 100644
--- a/man/mkinmod.Rd
+++ b/man/mkinmod.Rd
@@ -15,13 +15,16 @@ mkinmod(...)
   \item{...}{

     For each observed variable, a list has to be specified as an argument, containing

     at least a component \code{type}, specifying the type of kinetics to use

-    for the variable. Currently, only single first order kinetics "SFO" or

-    single first order with reversible binding "SFORB" are implemented, as well as

-    "FOMC" for the first compartment which is assumed to be the source compartment.

-    Optional components of each argument are \code{to}, a vector of names of

-    variables to which a transfer is to be assumed in the model, and

-    \code{sink}, a logical specifying if transformation to unspecified

-    compounds (sink) is to be assumed in the model (defaults to \code{TRUE})

+    for the variable. Currently, single first order kinetics "SFO" or

+    single first order with reversible binding "SFORB" are implemented for all

+    variables, while 

+    "FOMC", "DFOP" and "HS" can additionally be chosen for the first

+    variable which is assumed to be the source compartment.  Optional components

+    of each argument are \code{to}, a

+    vector of names of variables to which a transfer is to be assumed in the

+    model, and \code{sink}, a logical specifying if transformation to

+    unspecified compounds (sink) is to be assumed in the model (defaults to

+    \code{TRUE})

   }

 }

 \value{

@@ -31,6 +34,7 @@ mkinmod(...)
     \item{parms}{ A vector of parameter names occurring in the differential equations. }

     \item{map}{ A list containing named character vectors for each observed variable, specifying

       the modelling variables by which it is represented. }

+    \item{coefmat}{ The coefficient matrix, if the system of differential equations can be represented by one. }

 }

 \author{

   Johannes Ranke <jranke@{harlan.com,uni-bremen.de}>