Fork the gmkin GUI from mkin. See ChangeLog for details

1 files changed, 0 insertions, 75 deletions

diff --git a/man/summary.mkinfit.Rd b/man/summary.mkinfit.Rd
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-\name{summary.mkinfit}

-\alias{summary.mkinfit}

-\alias{print.summary.mkinfit}

-\title{

-  Summary method for class "mkinfit".

-}

-\description{

-  Lists model equations, the summary as returned by \code{\link{summary.modFit}},

-  the chi2 error levels calculated according to FOCUS guidance (2006) as far

-  as defined therein, and optionally the data, consisting of observed, predicted

-  and residual values.

-}

-\usage{

-\method{summary}{mkinfit}(object, data = TRUE, distimes = TRUE, alpha = 0.05, ...)

-\method{print}{summary.mkinfit}(x, digits = max(3, getOption("digits") - 3), ...)

-}

-

-\arguments{

-  \item{object}{

-  an object of class \code{\link{mkinfit}}.

-}

-  \item{x}{

-  an object of class \code{summary.mkinfit}.

-}

-  \item{data}{

-  logical, indicating whether the data should be included in the summary. 

-}

-  \item{distimes}{

-  logical, indicating whether DT50 and DT90 values should be included.

-}

-  \item{alpha}{

-  error level for confidence interval estimation from t distribution

-}

-  \item{digits}{

-  Number of digits to use for printing

-}

-  \item{\dots}{

-  optional arguments passed to methods like \code{print}.

-}

-}

-\value{

-  The summary function returns a list derived from

-  \code{\link{summary.modFit}}, with components, among others

-  \item{version, Rversion}{The mkin and R versions used}

-  \item{date.fit, date.summary}{The dates where the fit and the summary were produced}

-  \item{use_of_ff}{Was maximum or minimum use made of formation fractions}

-  \item{residuals, residualVariance, sigma, modVariance, df}{As in summary.modFit}

-  \item{cov.unscaled, cov.scaled, info, niter, stopmess, par}{As in summary.modFit}

-  \item{bpar}{Optimised and backtransformed parameters}

-  \item{diffs }{The differential equations used in the model}

-  \item{data }{The data (see Description above).}

-  \item{start }{The starting values and bounds, if applicable, for optimised parameters.}

-  \item{fixed }{The values of fixed parameters.}

-  \item{errmin }{The chi2 error levels for each observed variable.}

-  \item{bparms.ode }{All backtransformed ODE parameters, for use as starting parameters for

-    related models.}

-  \item{ff }{The estimated formation fractions derived from the fitted model.}

-  \item{distimes }{The DT50 and DT90 values for each observed variable.}

-  \item{SFORB}{If applicable, eigenvalues of SFORB components of the model.}

-  The print method is called for its side effect, i.e. printing the summary.

-}

-\references{

-  FOCUS (2006) \dQuote{Guidance Document on Estimating Persistence and

-  Degradation Kinetics from Environmental Fate Studies on Pesticides in EU

-  Registration} Report of the FOCUS Work Group on Degradation Kinetics,

-  EC Document Reference Sanco/10058/2005 version 2.0, 434 pp,

-  \url{http://focus.jrc.ec.europa.eu/dk} 

-}

-\author{

-  Johannes Ranke <jranke@{harlan.com,uni-bremen.de}>

-}

-\examples{

-  summary(mkinfit(mkinmod(parent = list(type = "SFO")), FOCUS_2006_A))

-}

-\keyword{ utilities }