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authorjranke <jranke@edb9625f-4e0d-4859-8d74-9fd3b1da38cb>2013-04-14 12:42:06 +0000
committerjranke <jranke@edb9625f-4e0d-4859-8d74-9fd3b1da38cb>2013-04-14 12:42:06 +0000
commit6168089ac43664c10ca2dc1281c8648fbf3b35a9 (patch)
tree1ac85698d15ccdf4b70c97fa8b88641c98f236c8 /vignettes/examples.Rnw
parent19537674a67c7b52ceb310bd47c0c2c04830ffb8 (diff)
- Update the TODO list, setting some requirements for version 1.0
- Check that initial values specified using parms.ini are actually needed for the model, stop otherwise - List all formation fractions in the same place in the summary, also if they were fitted in the model - Include an FOMC model coupled to two metabolites in the unit tests - Some updates needed because of the above - Update of static documentation including the vignettes - Update of the mkin vignettes in the vignettes directory git-svn-id: svn+ssh://svn.r-forge.r-project.org/svnroot/kinfit/pkg/mkin@82 edb9625f-4e0d-4859-8d74-9fd3b1da38cb
Diffstat (limited to 'vignettes/examples.Rnw')
-rw-r--r--vignettes/examples.Rnw6
1 files changed, 3 insertions, 3 deletions
diff --git a/vignettes/examples.Rnw b/vignettes/examples.Rnw
index fa35c8f..4897f7c 100644
--- a/vignettes/examples.Rnw
+++ b/vignettes/examples.Rnw
@@ -433,7 +433,7 @@ Z.mkin.1 <- mkinmod(Z0 = list(type = "SFO", to = "Z1", sink = FALSE),
Z2 = list(type = "SFO", to = "Z3"),
Z3 = list(type = "SFORB"))
m.Z.mkin.1 <- mkinfit(Z.mkin.1, FOCUS_2006_Z_mkin,
- parms.ini = c(k_Z0_Z1 = 0.5, k_Z1_Z2 = 0.3, k_Z2_Z3 = 0.2),
+ parms.ini = c(k_Z0_Z1 = 0.5, k_Z1_Z2 = 0.3),
quiet = TRUE)
plot(m.Z.mkin.1)
summary(m.Z.mkin.1, data = FALSE)
@@ -498,8 +498,8 @@ summary(m.Z.mkin.5, data = FALSE)
@
Looking at the confidence intervals of the SFORB model parameters of Z3, it is
-clear that nothing can be said about a degradation rate of Z3. However, this
-appears to be a feature of the data.
+clear that nothing can be said about the degradation rate of Z3 towards the end
+of the experiment. However, this appears to be a feature of the data.
<<FOCUS_2006_Z_residuals_11, fig=TRUE>>=
par(mfrow = c(2, 2))

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