diff options
| -rw-r--r-- | R/mkinparplot.R | 14 |
1 files changed, 9 insertions, 5 deletions
diff --git a/R/mkinparplot.R b/R/mkinparplot.R index 7a3a6d4..e7f405b 100644 --- a/R/mkinparplot.R +++ b/R/mkinparplot.R @@ -20,7 +20,8 @@ mkinparplot <- function(object) { deparms.optim = rownames(subset(object$start, type == "deparm")) fractions.optim = grep("^f_", deparms.optim, value = TRUE) if ("g" %in% deparms.optim) fractions.optim <- c("g", fractions.optim) - rates.optim = setdiff(deparms.optim, fractions.optim) + rates.optim.unsorted = setdiff(deparms.optim, fractions.optim) + rates.optim <- rownames(object$start[rates.optim.unsorted, ]) n.plot <- c(state.optim = length(state.optim), rates.optim = length(rates.optim), fractions.optim = length(fractions.optim)) @@ -42,15 +43,18 @@ mkinparplot <- function(object) { na.rm = TRUE, finite = TRUE), fractions.optim = range(c(0, 1, unlist(values)), na.rm = TRUE, finite = TRUE)) - stripchart(values["Estimate", ], + stripchart(values["Estimate", ][length(parnames):1], xlim = xlim, ylim = c(0.5, length(get(type)) + 0.5), yaxt = "n") if (type %in% c("rates.optim", "fractions.optim")) abline(v = 0, lty = 2) if (type %in% c("fractions.optim")) abline(v = 1, lty = 2) - text(mean(xlim), 1:length(parnames), parnames, pos = 3, offset = 1) - arrows(as.numeric(values["Lower", ]), 1:length(parnames), - as.numeric(values["Upper", ]), 1:length(parnames), + position <- ifelse(values["Estimate", ] < mean(xlim)/2, "right", "left") + text(ifelse(position == "left", min(xlim), max(xlim)), + length(parnames):1, parnames, + pos = ifelse(position == "left", 4, 2)) + arrows(as.numeric(values["Lower", ]), length(parnames):1, + as.numeric(values["Upper", ]), length(parnames):1, code = 3, angle = 90, length = 0.05) } par(oldpars) |