diff options
Diffstat (limited to 'R/mkinfit.R')
| -rw-r--r-- | R/mkinfit.R | 8 |
1 files changed, 4 insertions, 4 deletions
diff --git a/R/mkinfit.R b/R/mkinfit.R index 3e47479..fd53627 100644 --- a/R/mkinfit.R +++ b/R/mkinfit.R @@ -1,6 +1,6 @@ # $Id$
-# Copyright (C) 2010-2013 Johannes Ranke
+# Copyright (C) 2010-2014 Johannes Ranke
# Contact: jranke@uni-bremen.de
# The summary function is an adapted and extended version of summary.modFit
# from the FME package, v 1.1 by Soetart and Petzoldt, which was in turn
@@ -42,7 +42,7 @@ mkinfit <- function(mkinmod, observed, mod_vars <- names(mkinmod$diffs)
# Get the names of observed variables
- obs_vars = names(mkinmod$map)
+ obs_vars = names(mkinmod$spec)
# Subset observed data with names of observed data in the model
observed <- subset(observed, name %in% obs_vars)
@@ -110,12 +110,12 @@ mkinfit <- function(mkinmod, observed, # or a numeric ode solver from the deSolve package
if (!solution_type %in% c("auto", "analytical", "eigen", "deSolve"))
stop("solution_type must be auto, analytical, eigen or de Solve")
- if (solution_type == "analytical" && length(mkinmod$map) > 1)
+ if (solution_type == "analytical" && length(mkinmod$spec) > 1)
stop("Analytical solution not implemented for models with metabolites.")
if (solution_type == "eigen" && !is.matrix(mkinmod$coefmat))
stop("Eigenvalue based solution not possible, coefficient matrix not present.")
if (solution_type == "auto") {
- if (length(mkinmod$map) == 1) {
+ if (length(mkinmod$spec) == 1) {
solution_type = "analytical"
} else {
if (is.matrix(mkinmod$coefmat)) {
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