6 files changed, 50 insertions, 5 deletions
diff --git a/R/mkin_wide_to_long.R b/R/mkin_wide_to_long.R
index 8ec05ef..8e4ec60 100644
--- a/R/mkin_wide_to_long.R
+++ b/R/mkin_wide_to_long.R
@@ -1,6 +1,6 @@
 # $Id$
 
-# Copyright (C) 2010 Johannes Ranke
+# Copyright (C) 2010-2013 Johannes Ranke
 # Contact: mkin-devel@lists.berlios.de
 
 # This file is part of the R package mkin
@@ -17,7 +17,7 @@
 
 # You should have received a copy of the GNU General Public License along with
 # this program. If not, see <http://www.gnu.org/licenses/>
-
+utils::globalVariables(c("name", "value"))
 mkin_wide_to_long <- function(wide_data, time = "t")
 {
   colnames <- names(wide_data)
diff --git a/R/mkinerrmin.R b/R/mkinerrmin.R
index c278647..49538e3 100644
--- a/R/mkinerrmin.R
+++ b/R/mkinerrmin.R
@@ -1,6 +1,6 @@
 # $Id$
 
-# Copyright (C) 2010-2012 Johannes Ranke
+# Copyright (C) 2010-2013 Johannes Ranke
 # Contact: jranke@uni-bremen.de
 
 # This file is part of the R package mkin
@@ -17,7 +17,7 @@
 
 # You should have received a copy of the GNU General Public License along with
 # this program. If not, see <http://www.gnu.org/licenses/>
-
+utils::globalVariables(c("name"))
 mkinerrmin <- function(fit, alpha = 0.05)
 {
   parms.optim <- fit$parms.all
diff --git a/R/mkinfit.R b/R/mkinfit.R
index 411cb40..e084cf1 100644
--- a/R/mkinfit.R
+++ b/R/mkinfit.R
@@ -1,6 +1,6 @@
 # $Id$
 
-# Copyright (C) 2010-2012 Johannes Ranke
+# Copyright (C) 2010-2013 Johannes Ranke
 # Contact: jranke@uni-bremen.de
 # The summary function is an adapted and extended version of summary.modFit
 # from the FME package, v 1.1 by Soetart and Petzoldt, which was in turn
@@ -20,6 +20,7 @@
 
 # You should have received a copy of the GNU General Public License along with
 # this program. If not, see <http://www.gnu.org/licenses/>
+utils::globalVariables(c("name", "value"))
 
 mkinfit <- function(mkinmod, observed,
   parms.ini = "auto",
diff --git a/R/mkinresplot.R b/R/mkinresplot.R
index b348278..b45b26f 100644
--- a/R/mkinresplot.R
+++ b/R/mkinresplot.R
@@ -17,6 +17,7 @@
 
 # You should have received a copy of the GNU General Public License along with
 # this program. If not, see <http://www.gnu.org/licenses/>
+utils::globalVariables(c("variable", "residual"))
 
 mkinresplot <- function (object, obs_vars = vector(), 
   xlab = "Time", ylab = "Residual",
diff --git a/R/plot.mkinfit.R b/R/plot.mkinfit.R
index b47678b..fa1d805 100644
--- a/R/plot.mkinfit.R
+++ b/R/plot.mkinfit.R
@@ -1,3 +1,26 @@
+# $Id: $
+
+# Copyright (C) 2010-2013 Johannes Ranke
+# Contact: jranke@uni-bremen.de
+# The summary function is an adapted and extended version of summary.modFit
+# from the FME package, v 1.1 by Soetart and Petzoldt, which was in turn
+# inspired by summary.nls.lm
+
+# This file is part of the R package mkin
+
+# mkin is free software: you can redistribute it and/or modify it under the
+# terms of the GNU General Public License as published by the Free Software
+# Foundation, either version 3 of the License, or (at your option) any later
+# version.
+
+# This program is distributed in the hope that it will be useful, but WITHOUT
+# ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS
+# FOR A PARTICULAR PURPOSE.  See the GNU General Public License for more
+# details.
+
+# You should have received a copy of the GNU General Public License along with
+# this program. If not, see <http://www.gnu.org/licenses/>
+utils::globalVariables(c("type", "variable", "observed"))
 plot.mkinfit <- function(x, fit = x,
   xlab = "Time", ylab = "Observed",
   xlim = range(fit$data$time), ylim = c(0, max(fit$data$observed, na.rm = TRUE)),
diff --git a/R/transform_odeparms.R b/R/transform_odeparms.R
index 8b39874..f56478f 100644
--- a/R/transform_odeparms.R
+++ b/R/transform_odeparms.R
@@ -1,3 +1,23 @@
+# $Id$
+
+# Copyright (C) 2010-2013 Johannes Ranke
+# Contact: jranke@uni-bremen.de
+
+# This file is part of the R package mkin
+
+# mkin is free software: you can redistribute it and/or modify it under the
+# terms of the GNU General Public License as published by the Free Software
+# Foundation, either version 3 of the License, or (at your option) any later
+# version.
+
+# This program is distributed in the hope that it will be useful, but WITHOUT
+# ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS
+# FOR A PARTICULAR PURPOSE.  See the GNU General Public License for more
+# details.
+
+# You should have received a copy of the GNU General Public License along with
+# this program. If not, see <http://www.gnu.org/licenses/>
+
 transform_odeparms <- function(parms, mod_vars) {
   # Set up container for transformed parameters
   transparms <- parms