diff options
Diffstat (limited to 'R')
| -rw-r--r-- | R/mkinfit.R | 6 |
1 files changed, 6 insertions, 0 deletions
diff --git a/R/mkinfit.R b/R/mkinfit.R index f404356..64edaba 100644 --- a/R/mkinfit.R +++ b/R/mkinfit.R @@ -35,6 +35,9 @@ mkinfit <- function(mkinmod, observed, # Get the names of the state variables in the model
mod_vars <- names(mkinmod$diffs)
+ # See which variant of the model specification was used
+ use_of_ff <- mkinmod$use_of_ff
+
# Subset observed data with names of observed data in the model
observed <- subset(observed, name %in% names(mkinmod$map))
@@ -47,6 +50,9 @@ mkinfit <- function(mkinmod, observed, for (parmname in defaultpar.names) {
# Default values for rate constants, depending on the parameterisation
if (substr(parmname, 1, 2) == "k_") parms.ini[parmname] = 0.1
+ # Default values for rate constants for reversible binding
+ if (grepl("free_bound$", parmname)) parms.ini[parmname] = 0.1
+ if (grepl("bound_free$", parmname)) parms.ini[parmname] = 0.02
# Default values for formation fractions
if (substr(parmname, 1, 2) == "f_") parms.ini[parmname] = 0.1
# Default values for the FOMC, DFOP and HS models
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