diff options
Diffstat (limited to 'inst/GUI/mkinGUI.R')
| -rw-r--r-- | inst/GUI/mkinGUI.R | 146 |
1 files changed, 99 insertions, 47 deletions
diff --git a/inst/GUI/mkinGUI.R b/inst/GUI/mkinGUI.R index 2b8e0de..85bcdfb 100644 --- a/inst/GUI/mkinGUI.R +++ b/inst/GUI/mkinGUI.R @@ -109,13 +109,19 @@ m.cur = "1" # Initial fit lists {{{2
# The fits and summaries are collected in lists of lists
f <- s <- list()
-for (ds.index in 1:length(ds)) {
- f[[as.character(ds.index)]] <- list()
- s[[as.character(ds.index)]] <- list()
+# Dataframe with fits for selection {{{2
+update_f.df <- function() {
+ f.df <<- data.frame(Fit = character(),
+ Dataset = character(),
+ Model = character(),
+ stringsAsFactors = FALSE)
+ f.count <- 0
+ for (fit.index in names(f)) {
+ f.count <- f.count + 1
+ ftmp <- f[[fit.index]]
+ f.df[f.count, ] <<- c(as.character(f.count), ftmp$ds.index, ftmp$m.name)
+ }
}
-f[["1"]][["1"]] <- suppressWarnings(mkinfit(m[["1"]], override(ds[["1"]]$data),
- err = "err",
- control.modFit = list(maxiter = 0)))
# Widgets and handlers for project data {{{1
prg <- gexpandgroup("Project file management", cont = left, horizontal = FALSE)
@@ -196,19 +202,35 @@ m.gtable$value <- 1 # Button for setting up a fit for the selected dataset and model
gbutton("Configure fit for selected model and dataset", cont = dsm,
handler = function(h, ...) {
- ds.i <<- svalue(ds.gtable)
- m.i <<- svalue(m.gtable)
- f[[ds.i]][[m.i]] <<- suppressWarnings(
+ ds.i <<- as.character(svalue(ds.gtable))
+ m.i <<- as.character(svalue(m.gtable))
+ f.cur <<- as.character(as.numeric(f.cur) + 1)
+ f[[f.cur]] <<- suppressWarnings(
mkinfit(m[[m.i]], override(ds[[ds.i]]$data),
err = "err",
control.modFit = list(maxiter = 0)))
- stmp <- summary(f[[ds.i]][[m.i]])
- f.gg.parms[,] <- get_Parameters(stmp, FALSE)
+ s[[f.cur]] <- summary(f[[f.cur]])
+ f.gg.parms[,] <- get_Parameters(s[[f.cur]], FALSE)
show_plot("Initial", default = TRUE)
- svalue(pf) <- paste0("Dataset ", ds.i, ", Model ", m.i)
+ svalue(pf) <- paste0("Fit ", f.cur, ": Dataset ", ds.i,
+ ", Model ", m[[m.i]]$name)
svalue(center) <- 3
})
+# Fits {{{1
+f.gf <- gframe("Fits", cont = left, horizontal = FALSE)
+# Fit table with handler {{{2
+f.switcher <- function(h, ...) {
+ f.cur <<- svalue(h$obj)
+ update_plotting_and_fitting()
+ svalue(center) <- 3
+}
+f.df <- data.frame(Fit = "1", Dataset = "1", Model = "SFO",
+ stringsAsFactors = FALSE)
+f.gtable <- gtable(f.df, width = 290, cont = f.gf)
+addHandlerDoubleClick(f.gtable, f.switcher)
+size(f.gtable) <- list(columnWidths = c(80, 80, 120))
+
# Dataset editor {{{1
ds.editor <- gframe("Dataset 1", horizontal = FALSE, cont = center, label = "Dataset editor")
# Handler functions {{{3
@@ -268,7 +290,7 @@ empty_grid_handler <- function(h, ...) { ds.e.gdf[,] <- new.data
}
-save_ds_changes_handler <- function(h, ...) {
+keep_ds_changes_handler <- function(h, ...) {
ds[[ds.cur]]$title <<- svalue(ds.title.ge)
ds[[ds.cur]]$study_nr <<- as.numeric(gsub("Study ", "", svalue(ds.study.gc)))
update_ds.df()
@@ -325,8 +347,8 @@ ds.e.obu <- gedit(ds[[ds.cur]]$unit, gbutton("Generate empty grid for kinetic data", cont = ds.e.3b,
handler = empty_grid_handler)
-# Save button {{{4
-gbutton("Save changes", cont = ds.editor, handler = save_ds_changes_handler)
+# Keep button {{{4
+gbutton("Keep changes", cont = ds.editor, handler = keep_ds_changes_handler)
# Kinetic Data {{{4
ds.e.gdf <- gdf(ds[[ds.cur]]$data, name = "Kinetic data",
@@ -389,7 +411,7 @@ remove_compound_handler <- function(h, ...) { update_m_editor()
}
-save_m_changes_handler <- function(h, ...) {
+keep_m_changes_handler <- function(h, ...) {
spec <- list()
for (obs.i in 1:length(m.e.rows)) {
spec[[obs.i]] <- list(type = svalue(m.e.type[[obs.i]]),
@@ -419,7 +441,7 @@ gbutton("Copy model", cont = m.e.b, handler = copy_model_handler) gbutton("Delete model", cont = m.e.b, handler = delete_model_handler)
gbutton("Add transformation product", cont = m.e.b,
handler = add_observed_handler)
-gbutton("Save changes", cont = m.e.b, handler = save_m_changes_handler)
+gbutton("Keep changes", cont = m.e.b, handler = keep_m_changes_handler)
m.observed <- names(m[[m.cur]]$spec)
@@ -472,21 +494,23 @@ show_plot <- function(type, default = FALSE) { deparms <- as.numeric(Parameters.de[[type]])
names(deparms) <- rownames(Parameters.de)
if (type == "Initial" & default == FALSE) {
- f[[ds.i]][[m.i]] <<- suppressWarnings(
+ ftmp <- suppressWarnings(
mkinfit(m[[m.i]], override(ds[[ds.i]]$data),
state.ini = stateparms, parms.ini = deparms,
err = "err",
control.modFit = list(maxiter = 0))
)
+ } else {
+ ftmp <- f[[f.cur]]
}
tmp <- get_tempfile(ext=".svg")
svg(tmp, width = 7, height = 5)
- plot(f[[ds.i]][[m.i]], main = ds[[ds.i]]$title,
- xlab = ifelse(ds[[ds.i]]$time_unit == "", "Time",
- paste("Time in", ds[[ds.i]]$time_unit)),
+ plot(ftmp, main = ftmp$ds$title,
+ xlab = ifelse(ftmp$ds$time_unit == "", "Time",
+ paste("Time in", ftmp$ds$time_unit)),
ylab = ifelse(ds[[ds.i]]$unit == "", "Observed",
- paste("Observed in", ds[[ds.i]]$unit)))
+ paste("Observed in", ftmp$ds$unit)))
dev.off()
svalue(plot.gs) <<- tmp
}
@@ -515,44 +539,45 @@ run_fit <- function() { Parameters.de <- subset(Parameters, Type == "deparm")
deparms <- Parameters.de$Initial
names(deparms) <- rownames(Parameters.de)
- f[[ds.i]][[m.i]] <<- mkinfit(m[[m.i]], override(ds[[ds.i]]$data),
- state.ini = subset(Parameters,
- Type == "state")$Initial,
- parms.ini = deparms,
- err = "err")
- s[[ds.i]][[m.i]] <<- summary(f[[ds.i]][[m.i]])
- f.gg.parms[,] <- get_Parameters(s[[ds.i]][[m.i]], TRUE)
+ f[[f.cur]] <<- mkinfit(m[[m.i]], override(ds[[ds.i]]$data),
+ state.ini = subset(Parameters,
+ Type == "state")$Initial,
+ solution_type = svalue(f.gg.opts.st),
+ parms.ini = deparms,
+ err = "err")
+ f[[f.cur]]$ds.index <<- ds.i
+ f[[f.cur]]$ds <<- ds[[ds.i]]
+ f[[f.cur]]$m.index <<- m.i
+ f[[f.cur]]$m.name <<- m[[m.i]]$name
+ s[[f.cur]] <<- summary(f[[f.cur]])
+ f.gg.parms[,] <- get_Parameters(s[[f.cur]], TRUE)
show_plot("Optimised")
}
-ds.i <- m.i <- "1"
+ds.i <- m.i <- f.cur <- "1"
# GUI widgets {{{2
-pf <- gframe("Dataset 1, Model 1", horizontal = FALSE,
+pf <- gframe("Fit 1: Dataset 1, Model SFO", horizontal = FALSE,
cont = center, label = "Plotting and fitting")
-# Head row with buttons {{{3
-f.gg.head <- ggroup(cont = pf)
-gbutton("Show initial",
- handler = function(h, ...) show_plot("Initial"),
- cont = f.gg.head)
-gbutton("Run", handler = function(h, ...) run_fit(),
- cont = f.gg.head)
-
-# Mid group with plot and options
+# Mid group with plot and options {{{3
f.gg.mid <- ggroup(cont = pf)
-stmp <- summary(f[["1"]][["1"]])
+ftmp <- suppressWarnings(mkinfit(m[["1"]], override(ds[["1"]]$data),
+ err = "err",
+ control.modFit = list(maxiter = 0)))
+stmp <- summary(ftmp)
Parameters <- get_Parameters(stmp, FALSE)
tf <- get_tempfile(ext=".svg")
svg(tf, width = 7, height = 5)
-plot(f[["1"]][["1"]])
+plot(ftmp)
dev.off()
plot.gs <- gsvg(tf, container = f.gg.mid, width = 490, height = 350)
f.gg.opts <- gformlayout(cont = f.gg.mid)
solution_types <- c("analytical", "eigen", "deSolve")
-gcombobox(solution_types, selected = 1, label = "solution_type",
- width = 200, cont = f.gg.opts)
+f.gg.opts.st <- gcombobox(solution_types, selected = 1,
+ label = "solution_type", width = 200,
+ cont = f.gg.opts)
-# Dataframe with initial and optimised parameters
+# Dataframe with initial and optimised parameters {{{3
f.gg.parms <- gdf(Parameters, width = 420, height = 300, cont = pf,
do_add_remove_buttons = FALSE)
f.gg.parms$set_column_width(1, 200)
@@ -561,5 +586,32 @@ f.gg.parms$set_column_width(3, 60) f.gg.parms$set_column_width(4, 50)
f.gg.parms$set_column_width(5, 60)
-# 1}}}
-# vim: set foldmethod=marker ts=2 sw=2 expandtab:
+# Row with buttons {{{3
+f.gg.buttons <- ggroup(cont = pf)
+gbutton("Show initial",
+ handler = function(h, ...) show_plot("Initial"),
+ cont = f.gg.buttons)
+gbutton("Run", handler = function(h, ...) run_fit(),
+ cont = f.gg.buttons)
+gbutton("Keep", handler = function(h, ...) {
+ update_f.df()
+ f.gtable[,] <<- f.df
+ }, cont = f.gg.buttons)
+gbutton("Delete", handler = function(h, ...) {
+ f[[f.cur]] <<- NULL
+ s[[f.cur]] <<- NULL
+ names(f) <<- as.character(1:length(f))
+ update_f.df()
+ f.gtable[,] <<- f.df
+ f.cur <<- 1
+ }, cont = f.gg.buttons)
+
+# Update the plotting and fitting area {{{3
+update_plotting_and_fitting <- function() {
+ svalue(pf) <- paste0("Fit ", f.cur, ": Dataset ", f[[f.cur]]$ds.index,
+ ", Model ", f[[f.cur]]$m.name)
+ show_plot("Optimised")
+ svalue(f.gg.opts.st) <- f[[f.cur]]$solution_type
+ f.gg.parms[,] <- get_Parameters(s[[f.cur]], TRUE)
+}
+# vim: set foldmethod=marker ts=2 sw=2 expandtab: {{{1
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