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diff --git a/man/plot.mkinfit.Rd b/man/plot.mkinfit.Rd deleted file mode 100644 index 7009e7d..0000000 --- a/man/plot.mkinfit.Rd +++ /dev/null @@ -1,94 +0,0 @@ -\name{plot.mkinfit} -\alias{plot.mkinfit} -\title{ - Plot the observed data and the fitted model of an mkinfit object. -} -\description{ - Solves the differential equations with the optimised and fixed parameters - from a previous successful call to \code{\link{mkinfit}} and plots - the observed data together with the solution of the fitted model. -} -\usage{ -\method{plot}{mkinfit}(x, fit = x, - obs_vars = names(fit$mkinmod$map), - xlab = "Time", ylab = "Observed", - xlim = range(fit$data$time), - ylim = "default", - col_obs = 1:length(fit$mkinmod$map), pch_obs = col_obs, - lty_obs = rep(1, length(fit$mkinmod$map)), - add = FALSE, legend = !add, - show_residuals = FALSE, maxabs = "auto", - lpos = "topright", inset = c(0.05, 0.05), \dots) -} -\arguments{ - \item{x}{ - Alias for fit introduced for compatibility with the generic S3 method. - } - \item{fit}{ - an object of class \code{\link{mkinfit}}. - } - \item{obs_vars}{ - A character vector of names of the observed variables for which the - data and the model should be plotted. Defauls to all observed variables - in the model. - } - \item{xlab}{ - label for the x axis. - } - \item{ylab}{ - label for the y axis. - } - \item{xlim}{ - plot range in x direction. - } - \item{ylim}{ - plot range in y direction. - } - \item{col_obs}{ - colors used for plotting the observed data and the corresponding model prediction lines. - } - \item{pch_obs}{ - symbols to be used for plotting the data. - } - \item{lty_obs}{ - line types to be used for the model predictions. - } - \item{add}{ - should the plot be added to an existing plot? - } - \item{legend}{ - should a legend be added to the plot? - } - \item{show_residuals}{ - should residuals be shown in the lower third of the plot? - } - \item{maxabs}{ - Maximum absolute value of the residuals. This is used for the scaling of - the y axis and defaults to "auto". - } - \item{lpos}{ - position of the legend. Passed to \code{\link{legend}} as the first argument. - } - \item{inset}{ - Passed to \code{\link{legend}} if applicable. - } - \item{\dots}{ - further arguments passed to \code{\link{plot}}. - } -} -\value{ - The function is called for its side effect. -} -\examples{ -# One parent compound, one metabolite, both single first order. -SFO_SFO <- mkinmod( - parent = list(type = "SFO", to = "m1", sink = TRUE), - m1 = list(type = "SFO")) -# Fit the model to the FOCUS example dataset D using defaults -fit <- mkinfit(SFO_SFO, FOCUS_2006_D) -\dontrun{plot(fit)} -} -\author{ - Johannes Ranke -} -\keyword{ hplot } |