diff options
Diffstat (limited to 'man')
| -rw-r--r-- | man/mkinerrmin.Rd | 25 | ||||
| -rw-r--r-- | man/mkinpredict.Rd | 2 |
2 files changed, 13 insertions, 14 deletions
diff --git a/man/mkinerrmin.Rd b/man/mkinerrmin.Rd index 654115b..c43d87a 100644 --- a/man/mkinerrmin.Rd +++ b/man/mkinerrmin.Rd @@ -10,30 +10,29 @@ smallest relative error still resulting in passing the chi-squared test as defined in the FOCUS kinetics report from 2006.
}
\usage{
-mkinerrmin(errdata, n.parms, alpha = 0.05)
+mkinerrmin(fit, alpha = 0.05)
}
\arguments{
- \item{errdata}{
- A data frame with mean observed values in column named \code{value_mean}
- and predicted values in column \code{value_pred}.
-}
- \item{n.parms}{
- The number of optimized parameters to be taken into account for the data series.
-}
+ \item{fit}{
+ an object of class \code{\link{mkinfit}}.
+ }
\item{alpha}{
The confidence level chosen for the chi-squared test.
}
}
\value{
- A list with the following components:
+ A dataframe with the following components:
\item{err.min}{The relative error, expressed as a fraction.}
\item{n.optim}{The number of optimised parameters attributed to the data series.}
- \item{df}{The number of remaining degrees of freedom for the chi2 error level calculations.
- Note that mean values are used for the chi2 statistic and therefore every time point with
- observed values in the series only counts one time.}
+ \item{df}{The number of remaining degrees of freedom for the chi2 error level
+ calculations. Note that mean values are used for the chi2 statistic and
+ therefore every time point with observed values in the series only counts
+ one time.}
+ The dataframe has one row for the total dataset and one further row for
+ each observed state variable in the model.
}
\details{
- This function is used internally by \code{\link{mkinfit}}.
+ This function is used internally by \code{\link{summary.mkinfit}}.
}
\references{
FOCUS (2006) \dQuote{Guidance Document on Estimating Persistence and
diff --git a/man/mkinpredict.Rd b/man/mkinpredict.Rd index aaa77e6..d293144 100644 --- a/man/mkinpredict.Rd +++ b/man/mkinpredict.Rd @@ -60,7 +60,7 @@ mkinpredict(mkinmod, odeparms, odeini, outtimes, solution_type = "deSolve", map_ mkinpredict(SFO, c(k_degradinol_sink = 0.3), c(degradinol = 100), 1:20, solution_type = "analytical")[20,] mkinpredict(SFO, c(k_degradinol_sink = 0.3), c(degradinol = 100), 0:20, atol = 1e-20)[20,] # The integration method does not make a lot of difference - mkinpredict(SFO, c(k_degradinol_sink = 0.3), c(degradinol = 100), 0:20, atol = 1e-20, method = "bdf")[20,] + mkinpredict(SFO, c(k_degradinol_sink = 0.3), c(degradinol = 100), 0:20, atol = 1e-20, method = "ode45")[20,] mkinpredict(SFO, c(k_degradinol_sink = 0.3), c(degradinol = 100), 0:20, atol = 1e-20, method = "rk4")[20,] # The number of output times does make a lot of difference mkinpredict(SFO, c(k_degradinol_sink = 0.3), c(degradinol = 100), seq(0, 20, by = 0.1))[201,] |