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2013-12-04Add Makefile targets without vignette buildingJohannes Ranke1-8/+9
2013-12-04Remove mkinmod warning based on a misconceptionJohannes Ranke1-13/+2
2013-11-18Add GUI start function, keep GUI here in mkinJohannes Ranke7-8/+38
2013-11-17Merge branch 'r-forge'Johannes Ranke0-0/+0
2013-11-17Squashed commit of the following:jranke1-2/+0
commit f865119e13ac52d59d4a9850bff3804baeb887a7 Author: Johannes Ranke <jranke@uni-bremen.de> Date: Sun Nov 17 21:11:08 2013 +0100 Update of the TODO git-svn-id: svn+ssh://svn.r-forge.r-project.org/svnroot/kinfit/pkg/mkin@165 edb9625f-4e0d-4859-8d74-9fd3b1da38cb
2013-11-17Update of the TODOJohannes Ranke1-2/+0
2013-11-17Merge branch 'master' into r-forgejranke2-7/+1
git-svn-id: svn+ssh://svn.r-forge.r-project.org/svnroot/kinfit/pkg/mkin@164 edb9625f-4e0d-4859-8d74-9fd3b1da38cb
2013-11-17Conflicts:jranke39-724/+1599
README.md TODO git-svn-id: svn+ssh://svn.r-forge.r-project.org/svnroot/kinfit/pkg/mkin@163 edb9625f-4e0d-4859-8d74-9fd3b1da38cb
2013-11-17Change vignette format to knitr (see ChangeLog)Johannes Ranke39-727/+1595
2013-11-13Squashed commit of the following:jranke4-11/+56
commit d8dbf2ad866fb9d34cd1100000b9c116219ecef6 Author: Johannes Ranke <jranke@uni-bremen.de> Date: Wed Nov 13 22:09:41 2013 +0100 Add possibility to control more mkinfit arguments from the GUI commit 8f1bae2142b37a0ff6b8989b2d1569686937f68e Author: Johannes Ranke <jranke@uni-bremen.de> Date: Wed Nov 13 20:30:11 2013 +0100 Add initial weighting choice to GUI commit c99b5c298713a7c14e8ab5604c68613d0b7af27a Author: Johannes Ranke <jranke@uni-bremen.de> Date: Wed Nov 13 16:25:31 2013 +0100 Update of TODO from git bash on Windows commit 8bf2a6f8f6bd752433f06b26b5da334e958f5166 Author: Johannes Ranke <jranke@uni-bremen.de> Date: Wed Nov 13 16:00:01 2013 +0100 Update of README using TortoiseGit git-svn-id: svn+ssh://svn.r-forge.r-project.org/svnroot/kinfit/pkg/mkin@162 edb9625f-4e0d-4859-8d74-9fd3b1da38cb
2013-11-13Add possibility to control more mkinfit arguments from the GUIJohannes Ranke2-7/+40
2013-11-13Add initial weighting choice to GUIJohannes Ranke1-3/+16
2013-11-13Update of TODO from git bash on WindowsJohannes Ranke1-2/+2
2013-11-13Update of README using TortoiseGitJohannes Ranke1-5/+4
2013-11-12Merge branch 'master' into r-forgejranke1-0/+7
git-svn-id: svn+ssh://svn.r-forge.r-project.org/svnroot/kinfit/pkg/mkin@161 edb9625f-4e0d-4859-8d74-9fd3b1da38cb
2013-11-12Added Contributions section to READMEJohannes Ranke1-0/+7
2013-11-12Merge branch 'master' into r-forgejranke1-16/+23
git-svn-id: svn+ssh://svn.r-forge.r-project.org/svnroot/kinfit/pkg/mkin@160 edb9625f-4e0d-4859-8d74-9fd3b1da38cb
2013-11-12More history in the READMEJohannes Ranke1-12/+22
2013-11-12Merged README work from master branchjranke1-1/+50
git-svn-id: svn+ssh://svn.r-forge.r-project.org/svnroot/kinfit/pkg/mkin@159 edb9625f-4e0d-4859-8d74-9fd3b1da38cb
2013-11-12Some more work on the READMEJohannes Ranke1-12/+17
2013-11-12Add the feature section to the READMEJohannes Ranke1-1/+42
2013-11-12Squashed commit of the following:jranke1-0/+59
commit 66766071b638ef892a8f54741806c302c7b3ff94 Author: Johannes Ranke <jranke@uni-bremen.de> Date: Tue Nov 12 01:28:30 2013 +0100 Fixed link and improved text of the github README commit 64e1da1517abd57936bc8bd7410bb0c43c6b2a0a Author: Johannes Ranke <jranke@uni-bremen.de> Date: Tue Nov 12 01:20:20 2013 +0100 Some more meat to the README git-svn-id: svn+ssh://svn.r-forge.r-project.org/svnroot/kinfit/pkg/mkin@158 edb9625f-4e0d-4859-8d74-9fd3b1da38cb
2013-11-12Fixed link and improved text of the github READMEJohannes Ranke1-15/+17
2013-11-12Some more meat to the READMEJohannes Ranke1-0/+57
2013-11-11Update with README from githubjranke1-0/+5
git-svn-id: svn+ssh://svn.r-forge.r-project.org/svnroot/kinfit/pkg/mkin@157 edb9625f-4e0d-4859-8d74-9fd3b1da38cb
2013-11-11Vignettes are not built from the makefilejranke1-1/+1
git-svn-id: svn+ssh://svn.r-forge.r-project.org/svnroot/kinfit/pkg/mkin@156 edb9625f-4e0d-4859-8d74-9fd3b1da38cb
2013-11-11Change quotes to single as backquotes execute automaticallyjranke1-3/+3
git-svn-id: svn+ssh://svn.r-forge.r-project.org/svnroot/kinfit/pkg/mkin@155 edb9625f-4e0d-4859-8d74-9fd3b1da38cb
2013-11-11Fix quotes in makefilejranke1-3/+3
git-svn-id: svn+ssh://svn.r-forge.r-project.org/svnroot/kinfit/pkg/mkin@154 edb9625f-4e0d-4859-8d74-9fd3b1da38cb
2013-11-11Test a git commit while svn not up to datejranke1-0/+1
git-svn-id: svn+ssh://svn.r-forge.r-project.org/svnroot/kinfit/pkg/mkin@153 edb9625f-4e0d-4859-8d74-9fd3b1da38cb
2013-11-11Remove vignette PDFs to have them rebuilt on every buildjranke2-0/+0
git-svn-id: svn+ssh://svn.r-forge.r-project.org/svnroot/kinfit/pkg/mkin@152 edb9625f-4e0d-4859-8d74-9fd3b1da38cb
2013-11-11Adapt the makefile to presumed git workflowjranke1-2/+4
git-svn-id: svn+ssh://svn.r-forge.r-project.org/svnroot/kinfit/pkg/mkin@151 edb9625f-4e0d-4859-8d74-9fd3b1da38cb
2013-11-11- Add a simple makefilejranke4-9/+63
- Add a .Rbuildignore file - Clean up unit tests a bit - Test the gwidgets notebook from the knitr demo git-svn-id: svn+ssh://svn.r-forge.r-project.org/svnroot/kinfit/pkg/mkin@150 edb9625f-4e0d-4859-8d74-9fd3b1da38cb
2013-11-09GUI: Fixed a bug that occurred when deleting the last fit from the fit listjranke1-1/+1
git-svn-id: svn+ssh://svn.r-forge.r-project.org/svnroot/kinfit/pkg/mkin@149 edb9625f-4e0d-4859-8d74-9fd3b1da38cb
2013-11-07- Added additional plots, including residual plotsjranke1-7/+75
git-svn-id: svn+ssh://svn.r-forge.r-project.org/svnroot/kinfit/pkg/mkin@148 edb9625f-4e0d-4859-8d74-9fd3b1da38cb
2013-11-06GUI:jranke1-19/+30
- Uploading of text files works - The current summary is always shown git-svn-id: svn+ssh://svn.r-forge.r-project.org/svnroot/kinfit/pkg/mkin@144 edb9625f-4e0d-4859-8d74-9fd3b1da38cb
2013-11-06Start to enable the import of CSV files.jranke1-0/+31
git-svn-id: svn+ssh://svn.r-forge.r-project.org/svnroot/kinfit/pkg/mkin@143 edb9625f-4e0d-4859-8d74-9fd3b1da38cb
2013-11-06Another version bump as 0.9.24 is on CRAN nowjranke1-1/+1
git-svn-id: svn+ssh://svn.r-forge.r-project.org/svnroot/kinfit/pkg/mkin@142 edb9625f-4e0d-4859-8d74-9fd3b1da38cb
2013-11-06Version bump as I have just release 0.9.23 to CRANjranke1-1/+1
git-svn-id: svn+ssh://svn.r-forge.r-project.org/svnroot/kinfit/pkg/mkin@141 edb9625f-4e0d-4859-8d74-9fd3b1da38cb
2013-11-06Update of the vignettesjranke5-6/+8
git-svn-id: svn+ssh://svn.r-forge.r-project.org/svnroot/kinfit/pkg/mkin@140 edb9625f-4e0d-4859-8d74-9fd3b1da38cb
2013-11-06- New candidate for release containing the latest changes to the GUIjranke7-726/+102
- Checking and releasing myself as r-forge has a stuffed build pipeline git-svn-id: svn+ssh://svn.r-forge.r-project.org/svnroot/kinfit/pkg/mkin@139 edb9625f-4e0d-4859-8d74-9fd3b1da38cb
2013-11-05- Update of changelog and description file for release to CRANjranke2-3/+7
git-svn-id: svn+ssh://svn.r-forge.r-project.org/svnroot/kinfit/pkg/mkin@138 edb9625f-4e0d-4859-8d74-9fd3b1da38cb
2013-11-05- Use an increasing small numeric value instead of random numbers for ↵jranke1-1/+5
generating different default values for kinetic rate constants to increase transparency and reproducibility. This also works nicely. - Remove an outdated comment from the test script. git-svn-id: svn+ssh://svn.r-forge.r-project.org/svnroot/kinfit/pkg/mkin@137 edb9625f-4e0d-4859-8d74-9fd3b1da38cb
2013-11-04- Now the eigenvalue based solution for FOCUS 2006 D works flawlessly withjranke1-20/+2
default starting parameters - Took out a relatively long-lasting test that did not say much git-svn-id: svn+ssh://svn.r-forge.r-project.org/svnroot/kinfit/pkg/mkin@136 edb9625f-4e0d-4859-8d74-9fd3b1da38cb
2013-11-04Add small random numbers to default initial values for rate constants to avoidjranke1-2/+2
numerical artefacts occurring in eigenvalue based solutions. git-svn-id: svn+ssh://svn.r-forge.r-project.org/svnroot/kinfit/pkg/mkin@135 edb9625f-4e0d-4859-8d74-9fd3b1da38cb
2013-11-04Fixing parameters (initial state and differential equation parameters) nowjranke1-6/+12
also works in the experimental GUI git-svn-id: svn+ssh://svn.r-forge.r-project.org/svnroot/kinfit/pkg/mkin@134 edb9625f-4e0d-4859-8d74-9fd3b1da38cb
2013-11-04Complete the fix for fixing initial values for state variablesjranke2-1/+9
git-svn-id: svn+ssh://svn.r-forge.r-project.org/svnroot/kinfit/pkg/mkin@133 edb9625f-4e0d-4859-8d74-9fd3b1da38cb
2013-11-04Bugfix for a recently introduced breakage of fixed_initialsjranke3-2/+9
git-svn-id: svn+ssh://svn.r-forge.r-project.org/svnroot/kinfit/pkg/mkin@132 edb9625f-4e0d-4859-8d74-9fd3b1da38cb
2013-10-30Fits can now be saved in the project file in the experimental GUI, and ↵jranke1-15/+39
reloaded from it, together with the datasets and models. git-svn-id: svn+ssh://svn.r-forge.r-project.org/svnroot/kinfit/pkg/mkin@131 edb9625f-4e0d-4859-8d74-9fd3b1da38cb
2013-10-30Improved fit management in the experimental GUIjranke1-47/+99
git-svn-id: svn+ssh://svn.r-forge.r-project.org/svnroot/kinfit/pkg/mkin@130 edb9625f-4e0d-4859-8d74-9fd3b1da38cb
2013-10-30- Backtransform fixed ODE parameters for the summary (compare ChangeLog)jranke3-17/+8
- Reformatted ChangeLog - Version bump as mkin 0.9-22 is on CRAN git-svn-id: svn+ssh://svn.r-forge.r-project.org/svnroot/kinfit/pkg/mkin@129 edb9625f-4e0d-4859-8d74-9fd3b1da38cb

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